- From: Kei Cheung <kei.cheung@yale.edu>
- Date: Thu, 26 Feb 2009 22:03:18 -0500
- To: Alan Ruttenberg <alanruttenberg@gmail.com>
- CC: Chris Mungall <cjm@berkeleybop.org>, "andrea splendiani (RRes-Roth)" <andrea.splendiani@bbsrc.ac.uk>, public-semweb-lifesci hcls <public-semweb-lifesci@w3.org>, Maryann Martone <maryann@ncmir.ucsd.edu>
I gave the following neuroscience URI examples in my biordf talk at C-SHALS yesterday. http://dbpedia.org/resource/Dopamine_receptor http://purl.org/ycmi/senselab/neuron_ontology.owl#Dopaminergic_Receptor http://purl.org/nif/ontology/NIF-Molecule.owl#nifext_5832 I pointed out that the last one might be a possible solution. There might be hope. :-) -Kei Alan Ruttenberg wrote: >So I count three different sets of URIs for NCBI taxonomy so far. :( >-Alan > >On Fri, Feb 27, 2009 at 11:37 AM, Chris Mungall <cjm@berkeleybop.org> wrote: > > >>also.. >> >>part of the NCBI taxonomy is in NIF Organism: >> >>http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl >> >>See also: >> >> https://wiki.neuinfo.org/xwiki/bin/view/Main/NIFSTDoverview >> http://neuinfo.org >> >> >>On Feb 25, 2009, at 4:17 PM, andrea splendiani (RRes-Roth) wrote: >> >> >> >>>Thanks! >>> >>>It'2 240M, but compressed is only 9. >>>I wonder whether there is some architecture to transparently transfer >>>compressed ontologies... >>> >>>Ciao, >>>Andrea >>> >>>-----Original Message----- >>>From: Chris Mungall [mailto:cjm@berkeleybop.org] >>>Sent: 25 February 2009 20:53 >>>To: andrea splendiani (RRes-Roth) >>>Cc: public-semweb-lifesci hcls >>>Subject: Re: Is there an NCBI taxonomy in OWL ? >>> >>> >>>On Feb 25, 2009, at 11:58 AM, Andrea Splendiani wrote: >>> >>> >>> >>>>Hi, >>>> >>>>I was looking for an NCBI Taxnomoy in OWL, but I didn't find it (or >>>>better, could find fragment from other projects...) >>>> >>>>What is strange though, is that on the obo foundry website >>>>(berkeleybop.org/ontologies) there are notes on the ncbi taxonomy >>>>representation in owl... but not the representation itself. >>>> >>>> >>>Temporarily dropped from the summary page but still available at the >>>usual URL >>>http://purl.org/obo/owl/NCBITaxon >>> >>>(warning: large..) >>> >>> >>> >>>>Does anybody have some hint about where I can fin an OWL version ? >>>>Or even an RDF version ? Even better would a sparql endpoint >>>>containing it... >>>> >>>>best, >>>>Andrea Splendiani >>>> >>>> >>>> >>>> >>>> >>> >>> >> >> >> > > >
Received on Friday, 27 February 2009 03:04:07 UTC