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Re: Is there an NCBI taxonomy in OWL ?

From: Alan Ruttenberg <alanruttenberg@gmail.com>
Date: Fri, 27 Feb 2009 11:44:22 +0900
Message-ID: <29af5e2d0902261844m6a7b187fxace3853401655edb@mail.gmail.com>
To: Chris Mungall <cjm@berkeleybop.org>
Cc: "andrea splendiani (RRes-Roth)" <andrea.splendiani@bbsrc.ac.uk>, public-semweb-lifesci hcls <public-semweb-lifesci@w3.org>, Maryann Martone <maryann@ncmir.ucsd.edu>
So I count three different sets of URIs for NCBI taxonomy so far. :(
-Alan

On Fri, Feb 27, 2009 at 11:37 AM, Chris Mungall <cjm@berkeleybop.org> wrote:
> also..
>
> part of the NCBI taxonomy is in NIF Organism:
>
> http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl
>
> See also:
>
>  https://wiki.neuinfo.org/xwiki/bin/view/Main/NIFSTDoverview
>  http://neuinfo.org
>
>
> On Feb 25, 2009, at 4:17 PM, andrea splendiani (RRes-Roth) wrote:
>
>> Thanks!
>>
>> It'2 240M, but compressed is only 9.
>> I wonder whether there is some architecture to transparently transfer
>> compressed ontologies...
>>
>> Ciao,
>> Andrea
>>
>> -----Original Message-----
>> From: Chris Mungall [mailto:cjm@berkeleybop.org]
>> Sent: 25 February 2009 20:53
>> To: andrea splendiani (RRes-Roth)
>> Cc: public-semweb-lifesci hcls
>> Subject: Re: Is there an NCBI taxonomy in OWL ?
>>
>>
>> On Feb 25, 2009, at 11:58 AM, Andrea Splendiani wrote:
>>
>>> Hi,
>>>
>>> I was looking for an NCBI Taxnomoy in OWL, but I didn't find it (or
>>> better, could find fragment from other projects...)
>>>
>>> What is strange though, is that on the obo foundry website
>>> (berkeleybop.org/ontologies) there are notes on the ncbi taxonomy
>>> representation in owl... but not the representation itself.
>>
>> Temporarily dropped from the summary page but still available at the
>> usual URL
>> http://purl.org/obo/owl/NCBITaxon
>>
>> (warning: large..)
>>
>>> Does anybody have some hint about where I can fin an OWL version ?
>>> Or even an RDF version ? Even better would a sparql endpoint
>>> containing it...
>>>
>>> best,
>>> Andrea Splendiani
>>>
>>>
>>>
>>
>>
>
>
>
Received on Friday, 27 February 2009 02:45:05 GMT

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