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Re: Protege on MacOS 10.7 and 10.8: OWLViz broken; no version of graphviz seems to work

From: Luciano, Joanne S. <luciaj2@rpi.edu>
Date: Mon, 24 Jun 2013 15:21:01 +0000
To: "Sayogo, Djoko Sigit" <dsayogo@ctg.albany.edu>, "protege-owl@lists.stanford.edu" <protege-owl@lists.stanford.edu>
CC: Rafael Richards <rmrich5@gmail.com>, public-semweb-lifesci hcls <public-semweb-lifesci@w3.org>, "Andersen, David F" <david.andersen@albany.edu>, "Depaula, Nicolau F" <ndepaula@albany.edu>, Weijia Ran <ranweijia@gmail.com>
Message-ID: <13F06F47-B0B1-4053-B78C-3A8177B1ED01@rpi.edu>
Hi Djoko,
Per Trish's suggestion… let's include the protege-owl mailing list on this new info - they may be able to provide help.
Joanne

On Jun 24, 2013, at 11:11 AM, "Sayogo, Djoko Sigit" <dsayogo@ctg.albany.edu<mailto:dsayogo@ctg.albany.edu>>
 wrote:

Dear Joanne and Rafael,

For the OWL Vis, I will try to re-install the Graphviz.
But I also have problem with Protégé crash in two occasions: a) when defining data property with value other than integer and b) when inputting individual and using enter to put in the individual (this only happen after protégé runs for a while). Thank you.

Best,
Djoko

From: Luciano, Joanne S. [mailto:luciaj2@rpi.edu<http://rpi.edu>]
Sent: Sunday, June 23, 2013 12:21 AM
To: Rafael Richards; Sayogo, Djoko Sigit
Cc: public-semweb-lifesci hcls; Andersen, David F; Depaula, Nicolau F; Weijia Ran
Subject: Re: Protege on MacOS 10.7 and 10.8: OWLViz broken; no version of graphviz seems to work

Hi Rafael,

We had a problem Thursday with OWL Viz, however I don't think it was a Mac issue.  My initial impression was that it was an installation issue (wasn't on my machine), but now I recall Djoko saying that it wasn't an install issue. Djoko - please fill in.

(My suggestion was to check to install, and if problem persisted check web, ask on mailing list and if no success, report it.)

We aslo had a problem with protege crashing when we ran the reasoner
this was when one our properties was defined as a data property, but did not crash when defined as an object property.
Again, Djoko can fill in the details.

Joanne

~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Joanne S. Luciano, PhD
Tetherless World Constellation
Research Associate Professor
Rensselaer Polytechnic Institute
Deputy Director, Web Science Research Center
110 8th Street, Winslow 2143
Email: jluciano@rpi.edu<mailto:jluciano@rpi.edu>
Troy, NY 12180, USA
Office Tel. +1.518.276.4939
Global Tel. +1.617.440.4364 (skypeIn)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~




On Jun 21, 2013, at 5:59 PM, Rafael Richards <rmrich5@gmail.com<mailto:rmrich5@gmail.com>> wrote:


Only on my older Mac (OSX 10.6) does the Protege plugin OWLViz work;   in OSX 10.7 and 10.8, no matter what version of graphviz is installed (using Homebrew),  OwlViz does not work.
The documentation does not seem to help here.  The CompatibleWith  property needs to be extended and linked to external dependencies:

1.  Operating System type
2.  Operating system version
3.  Java version
4.  External application version (graphviz, etc.)

http://protegewiki.stanford.edu/index.php?title=Property:Compatible_with&from=Matrix+1.0.15#SMWResults
Has anyone else had the same problem?  Suggestions?
Thank you

Rafael Richards MD MS
Received on Monday, 24 June 2013 15:21:33 UTC

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