- From: Michel Dumontier <michel.dumontier@gmail.com>
- Date: Mon, 29 Apr 2013 17:20:39 +0100
- To: "dbcatalog@googlegroups.com" <dbcatalog@googlegroups.com>
- Cc: Health Care Life Sciences <w3.hcls@gmail.com>, "public-semweb-lifesci@w3.org" <public-semweb-lifesci@w3.org>
- Message-ID: <CALcEXf4yR-2NyP-U+wZZjWAHku2nHw1CAm9wFB9E-SgxmmKv8Q@mail.gmail.com>
given the bank holiday next week, perhaps we can schedule a call for tuesday? m. On Mon, Apr 29, 2013 at 5:04 PM, Alasdair J G Gray < Alasdair.Gray@manchester.ac.uk> wrote: > Hi All, > > Minutes from today's call attached. > > Alasdair > > > -- > You received this message because you are subscribed to the Google Groups > "dbcatalog" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to dbcatalog+unsubscribe@googlegroups.com. > For more options, visit https://groups.google.com/groups/opt_out. > > > > > On 29 Apr 2013, at 13:42, Michel Dumontier <michel.dumontier@gmail.com> > wrote: > > Hi all, > Here's the meeting info for today: > > -------------- > Meeting URL > http://fuze.me/19537803 > > Toll / Intl #: +1 (646) 583-7415 > Toll free #: > Attendee PIN #: 47479369 > -------------- > > > m. > > > On Mon, Apr 29, 2013 at 1:37 PM, Health Care Life Sciences < > w3.hcls@gmail.com> wrote: > >> more details »<https://www.google.com/calendar/event?action=VIEW&eid=cm1yMWZub29jN2Q4NjdqaTdkZmdma2RkOGMgcHVibGljLXNlbXdlYi1saWZlc2NpQHczLm9yZw&tok=MTcjdzMuaGNsc0BnbWFpbC5jb20zYjk2YjBjYjkyNGM0Zjg2MTZkYjJkZjZkMjg2Nzk1MTA4YTE0NmQw&ctz=America/New_York&hl=en> >> Linked Life Data >> This meeting will be held using fuze: please join at **Michel will send >> fuzebox info** >> >> Note: There have been various small hiccups with fuzebox so I recommend >> that you join ahead of time if you aren't sure about fuzebox working >> properly. I recently discovered that you will get *no message* if there is >> no Internet connectivity - it will simply do nothing when you start the >> local fuzebox client. >> >> Duration: ~1 hour >> (Variable) frequency: ~weekly >> Convener: M. Scott Marshall >> >> Session Theme: Metadata for data discovery and dataset description using >> SPARQL >> >> * a model for provenance, versioning, format and availability - Michel, >> Alasdair >> Relevant docs: >> the abstraction >> - >> https://docs.google.com/drawings/d/1e6qsxPkc-qKecVTJGJePE1Nuy2sD8Puu-FsEtUtGC-o/edit?disco=AAAAAFWHcnw >> sample implementation using chembl: >> - https://docs.google.com/file/d/0B4y0zfdRviKsS1l2NEttN3pfc1k/edit >> * Remaining metadata attributes in working draft - All (time allowing) >> - Working draft: >> - >> https://docs.google.com/spreadsheet/ccc?key=0Aoy0zfdRviKsdFJWTDFpblNXc3BtelhrdEpNYTdvbXc#gid=1 >> * AOB >> >> ********************************************************************** >> >> Michel and Alasdair have model proposal for a dataset version and >> formatting: thrashing out >> the final details and will present as the first item at the next call. >> >> Focus on provenance and origin: >> >> Version: literal >> Dates: Full date time with timezone >> Modified by: URI for a person >> Source: Needs to be present and specify the version/date of the source >> Prior version: point to URI >> Superseding version: Maintenance issue; can be inferred; provenance >> vocabularies >> only point backwards >> Subset/superset: only assert that you are a subset of another one >> Frequency of change: estimate; use a URI for the value, e.g. dublin core >> Latency of change: time it takes for changes in the raw data to appear in >> the derived >> dataset. Very specialised and probably not to be included >> created with: realised we need to point to a tool that was used to >> generate the dataset; >> particularly for D2R or Bio2RDF point to versions of scripts >> >> Aggregation of datasets is covered by source/derivation: simply include >> multiple sources >> >> Availability >> >> Availability: raises a maintenance issue; could capture available until X >> if it is known that >> it is no longer going to be available. Good for registry use case, but >> not necessarily for >> data publishing. It is a monitoring property. >> Publisher: need to decide a value set: literal/URI >> Format: mime type of the file, not the vocabularies used; EDAM, >> biosharing as >> candidates >> data item HTML template: to automate access >> RDF dump: available in multiple formats >> SPARQL endpoint >> API: point to a top level page about the API rather than each individual >> method >> Catlog/registry: point to records in registries. Inverse relationship >> with the registries >> >> >> >> >> >> >> >> >> >> >> *When* >> ********Weekly from 11:00 to 12:00 on Monday Eastern Time *Where* #hcls ( >> map <http://maps.google.com/maps?q=%23hcls&hl=en>) >> *Calendar* >> HCLS >> *Who* >> • >> w3.hcls@gmail.com - organizer >> • >> public-semweb-lifesci@w3.org >> • >> dbcatalog >> Going? **All events in this series: *Yes<https://www.google.com/calendar/event?action=RESPOND&eid=cm1yMWZub29jN2Q4NjdqaTdkZmdma2RkOGMgcHVibGljLXNlbXdlYi1saWZlc2NpQHczLm9yZw&rst=1&tok=MTcjdzMuaGNsc0BnbWFpbC5jb20zYjk2YjBjYjkyNGM0Zjg2MTZkYjJkZjZkMjg2Nzk1MTA4YTE0NmQw&ctz=America/New_York&hl=en>- >> Maybe<https://www.google.com/calendar/event?action=RESPOND&eid=cm1yMWZub29jN2Q4NjdqaTdkZmdma2RkOGMgcHVibGljLXNlbXdlYi1saWZlc2NpQHczLm9yZw&rst=3&tok=MTcjdzMuaGNsc0BnbWFpbC5jb20zYjk2YjBjYjkyNGM0Zjg2MTZkYjJkZjZkMjg2Nzk1MTA4YTE0NmQw&ctz=America/New_York&hl=en>- >> No<https://www.google.com/calendar/event?action=RESPOND&eid=cm1yMWZub29jN2Q4NjdqaTdkZmdma2RkOGMgcHVibGljLXNlbXdlYi1saWZlc2NpQHczLm9yZw&rst=2&tok=MTcjdzMuaGNsc0BnbWFpbC5jb20zYjk2YjBjYjkyNGM0Zjg2MTZkYjJkZjZkMjg2Nzk1MTA4YTE0NmQw&ctz=America/New_York&hl=en> >> * **more options »<https://www.google.com/calendar/event?action=VIEW&eid=cm1yMWZub29jN2Q4NjdqaTdkZmdma2RkOGMgcHVibGljLXNlbXdlYi1saWZlc2NpQHczLm9yZw&tok=MTcjdzMuaGNsc0BnbWFpbC5jb20zYjk2YjBjYjkyNGM0Zjg2MTZkYjJkZjZkMjg2Nzk1MTA4YTE0NmQw&ctz=America/New_York&hl=en> >> >> Invitation from Google Calendar <https://www.google.com/calendar/> >> >> You are receiving this courtesy email at the account >> public-semweb-lifesci@w3.org because you are an attendee of this event. >> >> To stop receiving future notifications for this event, decline this >> event. Alternatively you can sign up for a Google account at >> https://www.google.com/calendar/ and control your notification settings >> for your entire calendar. >> > > > > -- > Michel Dumontier > Associate Professor of Bioinformatics, Carleton University > Chair, W3C Semantic Web for Health Care and the Life Sciences Interest > Group > http://dumontierlab.com > > > Dr Alasdair J G Gray > Research Associate > Alasdair.Gray@manchester.ac.uk > +44 161 275 0145 > > http://www.cs.man.ac.uk/~graya/ > > Please consider the environment before printing this email. > > > -- Michel Dumontier Associate Professor of Bioinformatics, Carleton University Chair, W3C Semantic Web for Health Care and the Life Sciences Interest Group http://dumontierlab.com
Received on Monday, 29 April 2013 16:21:28 UTC