Re: Invitation: Linked Life Data @ Weekly from 11:00 to 12:00 on Monday (HCLS)

Hi All,

Minutes from today's call attached.

Alasdair



On 29 Apr 2013, at 13:42, Michel Dumontier <michel.dumontier@gmail.com> wrote:

> Hi all,
>  Here's the meeting info for today:
> 
>   --------------
> Meeting URL 
> http://fuze.me/19537803
> 
> Toll / Intl #: +1 (646) 583-7415
> Toll free #:
> Attendee PIN #:  47479369
> --------------
> 
> 
> m.
> 
> 
> On Mon, Apr 29, 2013 at 1:37 PM, Health Care Life Sciences <w3.hcls@gmail.com> wrote:
> more details »
> Linked Life Data
> 
> 
> This meeting will be held using fuze: please join at **Michel will send fuzebox info**
> Note: There have been various small hiccups with fuzebox so I recommend that you join ahead of time if you aren't sure about fuzebox working properly. I recently discovered that you will get *no message* if there is no Internet connectivity - it will simply do nothing when you start the local fuzebox client.
> 
> Duration: ~1 hour
> (Variable) frequency: ~weekly
> Convener: M. Scott Marshall
> 
> Session Theme: Metadata for data discovery and dataset description using SPARQL
> 
> * a model for provenance, versioning, format and availability - Michel, Alasdair
> 
> 
>   Relevant docs:
>   the abstraction
>   - https://docs.google.com/drawings/d/1e6qsxPkc-qKecVTJGJePE1Nuy2sD8Puu-FsEtUtGC-o/edit?disco=AAAAAFWHcnw
> 
> 
>   sample implementation using chembl: 
>   - https://docs.google.com/file/d/0B4y0zfdRviKsS1l2NEttN3pfc1k/edit
> * Remaining metadata attributes in working draft - All (time allowing)
> 
> 
>    - Working draft:
>    - https://docs.google.com/spreadsheet/ccc?key=0Aoy0zfdRviKsdFJWTDFpblNXc3BtelhrdEpNYTdvbXc#gid=1
> 
> 
> * AOB
> 
> **********************************************************************
> 
> Michel and Alasdair have model proposal for a dataset version and formatting: thrashing out
> the final details and will present as the first item at the next call.
> 
> Focus on provenance and origin:
> 
> Version: literal
> Dates: Full date time with timezone
> Modified by: URI for a person
> Source: Needs to be present and specify the version/date of the source
> Prior version: point to URI
> 
> 
> Superseding version: Maintenance issue; can be inferred; provenance vocabularies
> only point backwards
> Subset/superset: only assert that you are a subset of another one
> Frequency of change: estimate; use a URI for the value, e.g. dublin core
> 
> 
> Latency of change: time it takes for changes in the raw data to appear in the derived
> dataset. Very specialised and probably not to be included
> created with: realised we need to point to a tool that was used to generate the dataset;
> 
> 
> particularly for D2R or Bio2RDF point to versions of scripts
> 
> Aggregation of datasets is covered by source/derivation: simply include multiple sources
> 
> Availability
> 
> Availability: raises a maintenance issue; could capture available until X if it is known that
> 
> 
> it is no longer going to be available. Good for registry use case, but not necessarily for
> data publishing. It is a monitoring property.
> Publisher: need to decide a value set: literal/URI
> Format: mime type of the file, not the vocabularies used; EDAM, biosharing as
> 
> 
> candidates
> data item HTML template: to automate access
> RDF dump: available in multiple formats
> SPARQL endpoint
> API: point to a top level page about the API rather than each individual method
> Catlog/registry: point to records in registries. Inverse relationship with the registries
> 
> 
> 
> 
> 
> 
> 
> 
> 
> 
> 
> 
> 
> When
> Weekly from 11:00 to 12:00 on Monday Eastern Time
> Where	#hcls (map)
> Calendar
> HCLS
> Who
> •	
> w3.hcls@gmail.com - organizer
> •	
> public-semweb-lifesci@w3.org
> •	
> dbcatalog
> Going?   All events in this series:   Yes - Maybe - No    more options »
> Invitation from Google Calendar
> 
> You are receiving this courtesy email at the account public-semweb-lifesci@w3.org because you are an attendee of this event.
> 
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> 
> 
> 
> 
> -- 
> Michel Dumontier
> Associate Professor of Bioinformatics, Carleton University
> Chair, W3C Semantic Web for Health Care and the Life Sciences Interest Group
> http://dumontierlab.com

Dr Alasdair J G Gray
Research Associate
Alasdair.Gray@manchester.ac.uk
+44 161 275 0145

http://www.cs.man.ac.uk/~graya/

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