- From: N Juty <juty@ebi.ac.uk>
- Date: Mon, 29 Apr 2013 17:23:41 +0100
- To: Michel Dumontier <michel.dumontier@gmail.com>
- CC: "dbcatalog@googlegroups.com" <dbcatalog@googlegroups.com>, Health Care Life Sciences <w3.hcls@gmail.com>, "public-semweb-lifesci@w3.org" <public-semweb-lifesci@w3.org>
sounds good to me. sorry i got cut off as we were saying goodbyes ;p On 29/04/13 17:20, Michel Dumontier wrote: > given the bank holiday next week, perhaps we can schedule a call for > tuesday? > > m. > > > On Mon, Apr 29, 2013 at 5:04 PM, Alasdair J G Gray > <Alasdair.Gray@manchester.ac.uk > <mailto:Alasdair.Gray@manchester.ac.uk>> wrote: > > Hi All, > > Minutes from today's call attached. > > Alasdair > > > -- > You received this message because you are subscribed to the Google > Groups "dbcatalog" group. > To unsubscribe from this group and stop receiving emails from it, > send an email to dbcatalog+unsubscribe@googlegroups.com > <mailto:dbcatalog%2Bunsubscribe@googlegroups.com>. > For more options, visit https://groups.google.com/groups/opt_out. > > > > > On 29 Apr 2013, at 13:42, Michel Dumontier > <michel.dumontier@gmail.com <mailto:michel.dumontier@gmail.com>> > wrote: > >> Hi all, >> Here's the meeting info for today: >> >> -------------- >> Meeting URL >> http://fuze.me/19537803 >> >> Toll / Intl #: +1 (646) 583-7415 <tel:%2B1%20%28646%29%20583-7415> >> Toll free #: >> Attendee PIN #: 47479369 >> -------------- >> >> >> m. >> >> >> On Mon, Apr 29, 2013 at 1:37 PM, Health Care Life Sciences >> <w3.hcls@gmail.com <mailto:w3.hcls@gmail.com>> wrote: >> >> more details » >> <https://www.google.com/calendar/event?action=VIEW&eid=cm1yMWZub29jN2Q4NjdqaTdkZmdma2RkOGMgcHVibGljLXNlbXdlYi1saWZlc2NpQHczLm9yZw&tok=MTcjdzMuaGNsc0BnbWFpbC5jb20zYjk2YjBjYjkyNGM0Zjg2MTZkYjJkZjZkMjg2Nzk1MTA4YTE0NmQw&ctz=America/New_York&hl=en> >> >> >> Linked Life Data >> >> This meeting will be held using fuze: please join at **Michel >> will send fuzebox info** >> >> Note: There have been various small hiccups with fuzebox so I >> recommend that you join ahead of time if you aren't sure >> about fuzebox working properly. I recently discovered that >> you will get *no message* if there is no Internet >> connectivity - it will simply do nothing when you start the >> local fuzebox client. >> >> Duration: ~1 hour >> (Variable) frequency: ~weekly >> Convener: M. Scott Marshall >> >> Session Theme: Metadata for data discovery and dataset >> description using SPARQL >> >> * a model for provenance, versioning, format and availability >> - Michel, Alasdair >> Relevant docs: >> the abstraction >> - >> https://docs.google.com/drawings/d/1e6qsxPkc-qKecVTJGJePE1Nuy2sD8Puu-FsEtUtGC-o/edit?disco=AAAAAFWHcnw >> sample implementation using chembl: >> - >> https://docs.google.com/file/d/0B4y0zfdRviKsS1l2NEttN3pfc1k/edit >> * Remaining metadata attributes in working draft - All (time >> allowing) >> - Working draft: >> - >> https://docs.google.com/spreadsheet/ccc?key=0Aoy0zfdRviKsdFJWTDFpblNXc3BtelhrdEpNYTdvbXc#gid=1 >> * AOB >> >> ********************************************************************** >> >> Michel and Alasdair have model proposal for a dataset version >> and formatting: thrashing out >> the final details and will present as the first item at the >> next call. >> >> Focus on provenance and origin: >> >> Version: literal >> Dates: Full date time with timezone >> Modified by: URI for a person >> Source: Needs to be present and specify the version/date of >> the source >> Prior version: point to URI >> Superseding version: Maintenance issue; can be inferred; >> provenance vocabularies >> only point backwards >> Subset/superset: only assert that you are a subset of another one >> Frequency of change: estimate; use a URI for the value, e.g. >> dublin core >> Latency of change: time it takes for changes in the raw data >> to appear in the derived >> dataset. Very specialised and probably not to be included >> created with: realised we need to point to a tool that was >> used to generate the dataset; >> particularly for D2R or Bio2RDF point to versions of scripts >> >> Aggregation of datasets is covered by source/derivation: >> simply include multiple sources >> >> Availability >> >> Availability: raises a maintenance issue; could capture >> available until X if it is known that >> it is no longer going to be available. Good for registry use >> case, but not necessarily for >> data publishing. It is a monitoring property. >> Publisher: need to decide a value set: literal/URI >> Format: mime type of the file, not the vocabularies used; >> EDAM, biosharing as >> candidates >> data item HTML template: to automate access >> RDF dump: available in multiple formats >> SPARQL endpoint >> API: point to a top level page about the API rather than each >> individual method >> Catlog/registry: point to records in registries. Inverse >> relationship with the registries >> >> >> >> >> >> >> >> >> >> >> >> /When/ >> Weekly from 11:00 to 12:00 on Monday Eastern Time >> /Where/ #hcls(map >> <http://maps.google.com/maps?q=%23hcls&hl=en>) >> /Calendar/ >> HCLS >> /Who/ >> >> • >> w3.hcls@gmail.com <mailto:w3.hcls@gmail.com>- organizer >> • >> public-semweb-lifesci@w3.org >> <mailto:public-semweb-lifesci@w3.org> >> • >> dbcatalog >> >> Going? All events in this series: *Yes >> <https://www.google.com/calendar/event?action=RESPOND&eid=cm1yMWZub29jN2Q4NjdqaTdkZmdma2RkOGMgcHVibGljLXNlbXdlYi1saWZlc2NpQHczLm9yZw&rst=1&tok=MTcjdzMuaGNsc0BnbWFpbC5jb20zYjk2YjBjYjkyNGM0Zjg2MTZkYjJkZjZkMjg2Nzk1MTA4YTE0NmQw&ctz=America/New_York&hl=en>- >> Maybe >> <https://www.google.com/calendar/event?action=RESPOND&eid=cm1yMWZub29jN2Q4NjdqaTdkZmdma2RkOGMgcHVibGljLXNlbXdlYi1saWZlc2NpQHczLm9yZw&rst=3&tok=MTcjdzMuaGNsc0BnbWFpbC5jb20zYjk2YjBjYjkyNGM0Zjg2MTZkYjJkZjZkMjg2Nzk1MTA4YTE0NmQw&ctz=America/New_York&hl=en>- >> No >> <https://www.google.com/calendar/event?action=RESPOND&eid=cm1yMWZub29jN2Q4NjdqaTdkZmdma2RkOGMgcHVibGljLXNlbXdlYi1saWZlc2NpQHczLm9yZw&rst=2&tok=MTcjdzMuaGNsc0BnbWFpbC5jb20zYjk2YjBjYjkyNGM0Zjg2MTZkYjJkZjZkMjg2Nzk1MTA4YTE0NmQw&ctz=America/New_York&hl=en>* >> more options » >> <https://www.google.com/calendar/event?action=VIEW&eid=cm1yMWZub29jN2Q4NjdqaTdkZmdma2RkOGMgcHVibGljLXNlbXdlYi1saWZlc2NpQHczLm9yZw&tok=MTcjdzMuaGNsc0BnbWFpbC5jb20zYjk2YjBjYjkyNGM0Zjg2MTZkYjJkZjZkMjg2Nzk1MTA4YTE0NmQw&ctz=America/New_York&hl=en> >> >> Invitation from Google Calendar >> <https://www.google.com/calendar/> >> >> You are receiving this courtesy email at the account >> public-semweb-lifesci@w3.org >> <mailto:public-semweb-lifesci@w3.org> because you are an >> attendee of this event. >> >> To stop receiving future notifications for this event, >> decline this event. Alternatively you can sign up for a >> Google account at https://www.google.com/calendar/ and >> control your notification settings for your entire calendar. >> >> >> >> >> -- >> Michel Dumontier >> Associate Professor of Bioinformatics, Carleton University >> Chair, W3C Semantic Web for Health Care and the Life Sciences >> Interest Group >> http://dumontierlab.com <http://dumontierlab.com/> > > Dr Alasdair J G Gray > Research Associate > Alasdair.Gray@manchester.ac.uk <mailto:Alasdair.Gray@manchester.ac.uk> > +44 161 275 0145 <tel:%2B44%20161%20275%200145> > > http://www.cs.man.ac.uk/~graya/ <http://www.cs.man.ac.uk/%7Egraya/> > > Please consider the environment before printing this email. > > > > > > -- > Michel Dumontier > Associate Professor of Bioinformatics, Carleton University > Chair, W3C Semantic Web for Health Care and the Life Sciences Interest > Group > http://dumontierlab.com -- -------------------------------------------------------- Nick Juty Database Curator European Bioinformatics Institute Cambridge, United Kingdom --------------------------------------------------------
Received on Monday, 29 April 2013 16:24:15 UTC