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RE: HCLS SciDiscourse call Monday January 23, 2012, Use Case overview; Talk on DOMEO planned for January 30

From: Waard, Anita de A (ELS-NYC) <A.dewaard@elsevier.com>
Date: Mon, 23 Jan 2012 17:23:50 +0100
Message-ID: <994C62F4D342094CB0A2A3431B8ED8500B65DDBF@ELSAMSEXCP02VA.science.regn.net>
To: "Waard, Anita de A (ELS-NYC)" <A.dewaard@elsevier.com>, "Tim Clark" <tim.clark@rcn.com>, "HCLS IG" <public-semweb-lifesci@w3.org>, <scidiscourse@googlegroups.com>, <mal@aber.ac.uk>
Cc: "Alberto Accomazzi" <aaccomazzi@cfa.harvard.edu>, "Allen, Bradley P (ELS-SDG)" <B.Allen@elsevier.com>, "Sophia Ananiadou" <Sophia.Ananiadou@manchester.ac.uk>, "Philip Bourne" <bourne@sdsc.edu>, "Gully Burns" <gully@usc.edu>, "Daniel, Ronald (ELS-SDG)" <R.Daniel@elsevier.com>, "Rahul Dave" <rahuldave@gmail.com>, "Alf Eaton" <A.Eaton@nature.com>, "Alexander Garcia Castro" <alexgarciac@gmail.com>, "Matthew Gamble" <matthew.gamble@gmail.com>, "Yolanda Gil" <gil@isi.edu>, "Alyssa Goodman" <agoodman@cfa.harvard.edu>, "Paul Groth" <pgroth@gmail.com>, "Tudor Groza" <tudor.groza@deri.org>, "Hays, Ellen (ELS-BUR)" <E.Hays@elsevier.com>, "Maryann Martone" <maryann@ncmir.ucsd.edu>, "David R Newman" <drn05r@ecs.soton.ac.uk>, "Scerri, Antony (ELS-CAM)" <A.scerri@elsevier.com>, "Jack Park" <jackpark@gmail.com>, "Silvio Peroni" <speroni@cs.unibo.it>, "Steve Pettifer" <steve.pettifer@manchester.ac.uk>, "Philippe Rocca-Serra" <proccaserra@googlemail.com>, "Cartic Ramakrishnan" <cartic@isi.edu>, "Jodi Schneider" <jodi.schneider@deri.org>, "David Shotton" <david.shotton@zoo.ox.ac.uk>, "Kaitlin Thaney" <k.thaney@digital-science.com>, "Karin Verspoor" <Karin.Verspoor@ucdenver.edu>, "Lynette Hirschman" <lynette@mitre.org>, "Susanna-Assunta Sansone" <sa.sansone@gmail.com>, "Kees van Bochove" <business@keesvanbochove.nl>, "Katy Wolstencroft" <katy@cs.man.ac.uk>, "Jun Zhao" <jun.zhao@zoo.ox.ac.uk>, "Taylor, Michael (ELS-OXF)" <Mi.Taylor@Elsevier.com>
Please find enclosed the notes to our call. For a hyperlinked version, see  http://www.w3.org/wiki/HCLSIG/SWANSIOC/Actions/RhetoricalStructure/meetings/20120103


1. Use case 1 status, Rich Boyce:

    * gearing up for the C-SHALS presentation
    * in abstract we talked about a conceptual prototype for 2 packages, this is now available
    * Now going through the process of building a linked data set and revamping prototype in Linked Data standard
    * Current prototype: what does Package Insert enhanced with scientific literature look like? Now, want to mark up a paper, take annotations and bring into Linked Data graph and link to section in Package insert for two drugs
    * code will be posted here
    * Project page for the code here
    * Road map with milestones, are dividing among themselves
    * Now have all the structured product labels in the code repository and scientific articles for 2 drugs at C-SHALS
    * Met with Pieder Caduff to discuss XPharm/Pharmapendium to discuss details; figuring out protocol for this
    * Should talk to Provenance group; as Elsevier opens up Pharmapendium we should bring in some provenance markup to identify where data comes from - is Satellite standard compliant with new provenance standard? 

Anita to do: look at Satellite and PROV overlap Rich: at noon I will have a few full-text annotated with Sapienta will send it around

2. Use case 2 , David Shotton -

    * Stripped out information re. infectious disease - diagram mibio.png (sent around earlier)
    * Form to fill in is here can generate a report in the middi format in XML; recently at a hackathon people repurposed this format to describe cancer research papers
    * Now want to share with rest of the team and see what next steps are 

Q Anita how can this be used? A: david: can accompany article as a supplementary file; can be published separately e.g. as a pointer to the article or as a submission to e.g. Dryad or other data repository

    * Questions: 1) Are these the right things you want to add 2) How/where is it added?
    * Anita: suggest also looking at Rutgers research data metadata 

3. Use case 3

    * No news, ask Joanne Luciano for update next general meeting 

4. Next calls:

    * We'll keep 4-week general call schedule
    * Next general call February 20: Anita will invite someone from the PROV group to present [1]
    * Next week (January 30, 2012): Paolo Ciccarese will present re. DOMEO 


- Anita.  

Anita de Waard
Disruptive Technologies Director, Elsevier Labs

-----Original Message-----
From: Waard, Anita de A (ELS-NYC)
Sent: Fri 1/20/2012 16:30
To: Waard, Anita de A (ELS-NYC); Tim Clark; HCLS IG; scidiscourse@googlegroups.com; mal@aber.ac.uk
Cc: Alberto Accomazzi; Allen, Bradley P (ELS-SDG); Sophia Ananiadou; Philip Bourne; Gully Burns; Daniel, Ronald (ELS-SDG); Rahul Dave; Alf Eaton; Alexander Garcia Castro; Matthew Gamble; Yolanda Gil; Alyssa Goodman; Paul Groth; Tudor Groza; Hays, Ellen (ELS-BUR); Maryann Martone; David R Newman; Scerri, Antony (ELS-CAM); Jack Park; Silvio Peroni; Steve Pettifer; Philippe Rocca-Serra; Cartic Ramakrishnan; Jodi Schneider; David Shotton; Kaitlin Thaney; Karin Verspoor; Lynette Hirschman; Susanna-Assunta Sansone; Kees van Bochove; Katy Wolstencroft; Jun Zhao; Taylor, Michael  (ELS-OXF)
Subject: HCLS SciDiscourse call Monday January 23, 2012, Use Case overview; Talk on DOMEO planned for January 30
Dear all, 

I cordially invite you to Monday's scientific discourse call, where we will do a status update on the three use cases we are working on. 

For links, more details and dial-in info see the wiki, and below:
Dial-in & IRC Information:

Dial-In #: +1.617.761.6200 (Cambridge, MA)
Dial-In #: + (Paris, France)
Dial-In #: +44.203.318.0479 (London, UK)
Participant Access Code: 42572 ("HCLS2")
IRC Channel: irc.w3.org port 6665 channel #HCLS2 use IRC direct link or (see W3C IRC page for details, or see Web IRC)
Mibbit quick start: Click on mibbit for instant IRC access
Duration: 1hr

Next week, on January 30, Paolo Ciccarese will present his work on the DOMEO web annotation toolkit. The Domeo Web Annotation Toolkit provides several important items of common infrastructure that can help support the textmining community by offering: 
- Shared results repository with selective sharing (personal, group, public)
- Standardized serialization and export of results in Annotation Ontology RDF/XML
- Results injection and contextualization on any web page
- Common curation, annotation and comparison user interface
- Web service interfaces

His talk and demo will discuss current facilities and future plans for Domeo relating to specifically to textmining use cases. Also, Paolo and a representative from the Apache/Clerezza community will discuss DOMEO's integration with the Apache framework. 


- Anita.  

Anita de Waard
Disruptive Technologies Director, Elsevier Labs

Elsevier B.V. Registered Office: Radarweg 29, 1043 NX Amsterdam, The Netherlands, Registration No. 33156677 (The Netherlands)

Received on Monday, 23 January 2012 16:28:52 UTC

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