- From: Helen Parkinson <parkinson@ebi.ac.uk>
- Date: Fri, 08 Jul 2011 15:44:05 +0100
- To: Michael Miller <Michael.Miller@systemsbiology.org>
- CC: tomasz.adamusiak@ebi.ac.uk, public-semweb-lifesci@w3.org
Hi Michael it would help to prioritize what to represent if we had a set of concrete use cases for the points you mention. We can generate RDF for lots of elements of the experiments of course - cheers Helen On 08/07/2011 15:37, Michael Miller wrote: > hi tomasz, > > thanks for the update, nice! and again to jun for hosting. > > the documentation is appreciated, interestingly enough, in the diagram, it > looks like it is only the relationship between the experiment, the set of > sequences and their differential measurements per experimental factor > value. is there an overall, across the factors, differential measurement > (e.g. limma) or am i missing something? > > are you also planning on RDFizing the information on the experiment (the > idf and sdrf info) that is in ArrayExpress? > > cheers, > michael > > Michael Miller > Software Engineer > Institute for Systems Biology > >> -----Original Message----- >> From: public-semweb-lifesci-request@w3.org [mailto:public-semweb- >> lifesci-request@w3.org] On Behalf Of Tomasz Adamusiak >> Sent: Friday, July 08, 2011 3:57 AM >> To: public-semweb-lifesci@w3.org >> Subject: GXA triples >> >> Hi, >> >> [Resending as my original email seems to be lost in moderation.] >> >> Jun has kindly reloaded a new batch of Atlas triples that James and I >> generated. In this release there are up to 500 top differentially >> expressed genes per experiment available and a total number of triples >> increased from ~37 to ~170 million. >> >> More information is available at: >> http://www.ebi.ac.uk/efo/semanticweb/atlas >> >> SPARQL examples are collated at: >> http://code.google.com/p/open-biomed/wiki/GeneExpressionAtlas >> >> We've also deployed a secondary endpoint that mirrors the data: >> http://wwwdev.ebi.ac.uk/microarray-srv/openrdf-sesame/repositories/gxa >> >> Feedback very much welcome. >> >> Cheers >> Tomasz >> >> >> -- >> Tomasz Adamusiak, MD, PhD >> European Bioinformatics Institute >> +44 (0) 1223 492 562 >> tomasz.adamusiak@ebi.ac.uk >> -- Helen Parkinson, PhD Team Leader Functional Genomics Group EBI EBI 01223 494672 Skype: helen.parkinson.ebi www.ebi.ac.uk/fgpt/
Received on Friday, 8 July 2011 14:44:49 UTC