RE: BioRDF Telcon

hi all,

yes, at http://bioportal.bioontology.org/ontologies/40510.  one odd
thing is that the link to the latest 1.3 is there three times and the
topmost explore link caused an error.

cheers,
michael

Michael Miller
Lead Software Developer
Rosetta Biosoftware Business Unit
www.rosettabio.com

> -----Original Message-----
> From: public-semweb-lifesci-request@w3.org 
> [mailto:public-semweb-lifesci-request@w3.org] On Behalf Of 
> Maryann Martone
> Sent: Tuesday, September 01, 2009 12:26 PM
> To: Helen Parkinson
> Cc: Kei Cheung; Nigam Shah; HCLS; tomasz.adamusiak@gmail.com; 
> Fahim Imam
> Subject: Re: BioRDF Telcon
> 
> It is there.  I know that Fahim uploaded the latest;  I don't 
> know if  
> it's exposed yet.  The BIoportal has had some troubles with the  
> modular design, but I think most have been worked out
> 
> On Sep 1, 2009, at 12:12 PM, Helen Parkinson wrote:
> 
> > Having the NIFSTD in bioportal would be ideal, we will 
> always defer  
> > to NIF for neuroscience terms,
> >
> > best
> >
> > Helen
> >
> > Kei Cheung wrote:
> >> Nigam Shah wrote:
> >>> On Tue, Sep 1, 2009 at 6:37 AM, Helen Parkinson  
> >>> <parkinson@ebi.ac.uk <mailto:parkinson@ebi.ac.uk>> wrote:
> >>>
> >>>    The performance depends largely on how well the ontology is
> >>>    aligned with the input data, for this reason we 
> developed our own
> >>>    ontology.
> >>>
> >>> This is very true. However, if there is already an existing  
> >>> ontology that matches the input data well (e.g. the NCI 
> Thesaurus  
> >>> in case of Tissue Microarray Annotations in TMAD 
> (http://tma.stanford.edu/ 
> >>> ) .. then its possible to use the annotator tool at NCBO 
> (http://bioportal.bioontology.org/annotate 
> >>> ).
> >>>
> >>> Regards,
> >>> Nigam.
> >> I notice that EFO is accessible through BioPortal. As the 
> Neurolex  
> >> group is in the process of updating NIFSTD, perhaps the 
> new version  
> >> of NIFSTD may also be made accessible through BioPortal when it's  
> >> ready.
> >>
> >> Thanks,
> >>
> >> -Kei
> >>
> >
> 
> 
> 
> 
> Maryann Martone
> Professor-In-Residence
> Dept of Neurosciences
> University of California, San Diego
> San Diego, CA  92093-0446
> Tel:  858 822 0745
> Fax:  858 246 0644
> 
> 
> 
> 
> 
>

Received on Tuesday, 1 September 2009 19:51:33 UTC