The latest version of NIFSTD is accessible in BioPortal at http://bioportal.bioontology.org/virtual/1084 (Note: the URL with 'virtual' will always point to the latest version). Trish On Tue, Sep 1, 2009 at 12:25 PM, Maryann Martone <maryann@ncmir.ucsd.edu>wrote: > It is there. I know that Fahim uploaded the latest; I don't know if it's > exposed yet. The Bioportal has had some troubles with the modular design, > but I think most have been worked out > > > On Sep 1, 2009, at 12:12 PM, Helen Parkinson wrote: > > Having the NIFSTD in bioportal would be ideal, we will always defer to NIF >> for neuroscience terms, >> >> best >> >> Helen >> >> Kei Cheung wrote: >> >>> Nigam Shah wrote: >>> >>>> On Tue, Sep 1, 2009 at 6:37 AM, Helen Parkinson <parkinson@ebi.ac.uk<mailto: >>>> parkinson@ebi.ac.uk>> wrote: >>>> >>>> The performance depends largely on how well the ontology is >>>> aligned with the input data, for this reason we developed our own >>>> ontology. >>>> >>>> This is very true. However, if there is already an existing ontology >>>> that matches the input data well (e.g. the NCI Thesaurus in case of Tissue >>>> Microarray Annotations in TMAD (http://tma.stanford.edu/) .. then its >>>> possible to use the annotator tool at NCBO ( >>>> http://bioportal.bioontology.org/annotate). >>>> >>>> Regards, >>>> Nigam. >>>> >>> I notice that EFO is accessible through BioPortal. As the Neurolex group >>> is in the process of updating NIFSTD, perhaps the new version of NIFSTD may >>> also be made accessible through BioPortal when it's ready. >>> >>> Thanks, >>> >>> -Kei >>> >>> >> > > > > Maryann Martone > Professor-In-Residence > Dept of Neurosciences > University of California, San Diego > San Diego, CA 92093-0446 > Tel: 858 822 0745 > Fax: 858 246 0644 > > > > > >
Received on Tuesday, 1 September 2009 21:17:44 UTC