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Re: BioRDF Telcon

From: Maryann Martone <maryann@ncmir.ucsd.edu>
Date: Tue, 1 Sep 2009 12:25:55 -0700
Cc: Kei Cheung <kei.cheung@yale.edu>, Nigam Shah <nigam@stanford.edu>, HCLS <public-semweb-lifesci@w3.org>, tomasz.adamusiak@gmail.com, Fahim Imam <smtifahim@gmail.com>
Message-Id: <80CA4CDE-D580-4BF7-859A-97A6659D21CC@ncmir.ucsd.edu>
To: Helen Parkinson <parkinso@ebi.ac.uk>
It is there.  I know that Fahim uploaded the latest;  I don't know if  
it's exposed yet.  The BIoportal has had some troubles with the  
modular design, but I think most have been worked out

On Sep 1, 2009, at 12:12 PM, Helen Parkinson wrote:

> Having the NIFSTD in bioportal would be ideal, we will always defer  
> to NIF for neuroscience terms,
>
> best
>
> Helen
>
> Kei Cheung wrote:
>> Nigam Shah wrote:
>>> On Tue, Sep 1, 2009 at 6:37 AM, Helen Parkinson  
>>> <parkinson@ebi.ac.uk <mailto:parkinson@ebi.ac.uk>> wrote:
>>>
>>>    The performance depends largely on how well the ontology is
>>>    aligned with the input data, for this reason we developed our own
>>>    ontology.
>>>
>>> This is very true. However, if there is already an existing  
>>> ontology that matches the input data well (e.g. the NCI Thesaurus  
>>> in case of Tissue Microarray Annotations in TMAD (http://tma.stanford.edu/ 
>>> ) .. then its possible to use the annotator tool at NCBO (http://bioportal.bioontology.org/annotate 
>>> ).
>>>
>>> Regards,
>>> Nigam.
>> I notice that EFO is accessible through BioPortal. As the Neurolex  
>> group is in the process of updating NIFSTD, perhaps the new version  
>> of NIFSTD may also be made accessible through BioPortal when it's  
>> ready.
>>
>> Thanks,
>>
>> -Kei
>>
>




Maryann Martone
Professor-In-Residence
Dept of Neurosciences
University of California, San Diego
San Diego, CA  92093-0446
Tel:  858 822 0745
Fax:  858 246 0644
Received on Tuesday, 1 September 2009 19:26:31 UTC

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