Re: scientific publishing task force update

>>>>> "MM" == Mark Musen <musen@stanford.edu> writes:

  MM> On Jun 8, 2006, at 10:09 PM, AJ Chen wrote:
  >> The first task is to develop an ontology for self-publishing of
  >> experiment. I have proposed a list of objects and properties
  >> related to self-publishing experiment. Please download the
  >> attached file under Task Status and review the proposal. Your
  >> feedback and comments will be greatly appreciated.  You may also
  >> edit the file directly and email me the edited file.
  >> 

  MM> A colleague just pointed me to this (rather vacuous) article.
  MM> Does anyone know more about this work?

  MM> http://www.newscientisttech.com/article/dn9288-translator-lets-
  MM> computers-understand-experiments-.html



It's a middle ontology for describing experiments--hypothesis,
conclusions that sort of thing. Larisa Soldatova and Ross King have
been working on this for a couple of years. As some one else
mentioned, it fits in with Ross' earlier work on a robot scientist
which was really very nice. 

They also wrote an interesting paper on the state of bio-ontologies. 

Nature Biotechnology  23, 1095 - 1098 (2005)
doi:10.1038/nbt0905-1095
Are the current ontologies in biology good ontologies?

Larisa N Soldatova & Ross D King


EXPO is quite nice, but as the article suggests there needs to be some
serious work on UI's before it scientists would actually start using
it. Will be interesting to see how that work goes. 

Phil

Received on Monday, 12 June 2006 09:39:53 UTC