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Re: Advice for applying Bioschemas to BBMRI Directory

From: Vittorio Meloni <vittorio.meloni@crs4.it>
Date: Tue, 6 Apr 2021 14:33:01 +0200
Message-ID: <CAFqAGswEU3-zUq=DqbP733pm+uDUdtytUXpJdCEmR3DgF_Xw2A@mail.gmail.com>
To: jerven Bolleman <jerven.bolleman@sib.swiss>
Cc: public-bioschemas@w3.org
Hi Jerven,
yes of course. You can find attached an example of a Biobank and a
Collection one.

Thanks,
Vittorio

Il giorno mar 6 apr 2021 alle ore 14:12 jerven Bolleman
<jerven.bolleman@sib.swiss> ha scritto:

> Hi Petr, Vittorio,
>
> Would you mind sharing some markup/json-ld so that we have a concrete
> example to work with. For me at least a concrete example helps a lot.
>
> Regards,
> Jerven
>
> On 06/04/2021 14:07, Petr Holub wrote:
> > Dear all,
> >
> > could you please review Vittorio's proposal below? We are implementing
> > the BioSchemas into production in the BBMRI-ERIC Directory and the
> > initial mapping we have done almost 3 years back are no longer usable -
> > and thus Vittorio has created the proposal below and we would like to
> > confirm it before continuing.
> >
> > Thanks,
> > Petr
> >
> >
> >
> > **Assoc. Prof. *RNDr. Petr Holub, Ph.D.
> > *Senior IT/Data Protection Manager*
> >
> > BBMRI-ERIC*  | Neue Stiftingtalstrasse 2/B/6 |  8010 Graz | AUSTRIA
> > Phone: +43 316 34 99 17-18  | Fax: +43 316 34 99 17-99 | Mobile: +43 664
> > 88 72 18 77
> > Skype:holubp | petr.holub@bbmri-eric.eu
> > <mailto:petr.holub@bbmri-eric.eu> | www.bbmri-eric.eu
> > <http://www.bbmri-eric.eu><
> https://mail.acpcloud.de/owa/redir.aspx?C=tQtD-G9C_kuPP8hViFQ4hgNjuhtf_dEI0JIE-vC5gXhf36JcThZMI5N8J9ocveR1mgFita1orqo.&URL=http%3a%2f%2fwww.bbmri-eric.eu%2f
> >
> >
> > ------------------------------------------------------------------------
> > *From:* Vittorio Meloni <vittorio.meloni@crs4.it>
> > *Sent:* Tuesday, March 30, 2021 14:09
> > *To:* public-bioschemas@w3.org <public-bioschemas@w3.org>
> > *Subject:* Advice for applying Bioschemas to BBMRI Directory
> > Dear Bioschemas Members,
> > I am Vittorio Meloni and I'm collaborating with BBMRI to add Bioschemas
> > into the Biobanks' Directory. In particular, I need to represent
> > Biobanks and Collections concepts, which are compliant with the MIABIS
> > 2.0 model: the Biobank is the organization that stores samples and data
> > related to the samples while a Collection is the set of samples.
> > According to these definitions, I mapped the Biobank to DataCatalog,
> > using the "provider" attribute to describe the organization and the
> > "dataset" attribute for the list of Collections, and the Collection to a
> > Dataset. Do you think this mapping would be correct?
> > Another issue I have is how to add additional properties to a
> > Collection: for example, how can I express that a Collection collects
> > materials as DNA? With the DataRecord I could use additionalProperty,
> > but it is Deprecated now. I've found the variableMeasured property but
> > I'm not sure it fits correctly. Do you think that's the right way to go?
> >
> > Any suggestion or comment would be appreciated.
> > Thank you,
> > Vittorio
> >
> > --
> > Vittorio Meloni
> > Data Intensive Computing - Digital Health Group
> > CRS4 - Centro di Ricerche, Sviluppo e Studi Superiori della Sardegna
> > POLARIS, Edificio 1, 09010 PULA (CA - Italy)
> >
> > Email: vittorio.meloni@crs4.it
> > <https://webmail.crs4.it/imp/message.php?index=221#>
>
> --
>
>         *Jerven Tjalling Bolleman*
> Principal Software Developer
> *SIB | Swiss Institute of Bioinformatics*
> 1, rue Michel Servet - CH 1211 Geneva 4 - Switzerland
> t +41 22 379 58 85
> Jerven.Bolleman@sib.swiss - www.sib.swiss
>
>
>

-- 
Vittorio Meloni
Data Intensive Computing - Digital Health Group
CRS4 - Centro di Ricerche, Sviluppo e Studi Superiori della Sardegna
POLARIS, Edificio 1, 09010 PULA (CA - Italy)

Email: vittorio.meloni@crs4.it
<https://webmail.crs4.it/imp/message.php?index=221#>

Received on Tuesday, 6 April 2021 12:33:33 UTC

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