Re: Advice for applying Bioschemas to BBMRI Directory

Hi Petr, Vittorio,

Would you mind sharing some markup/json-ld so that we have a concrete 
example to work with. For me at least a concrete example helps a lot.

Regards,
Jerven

On 06/04/2021 14:07, Petr Holub wrote:
> Dear all,
> 
> could you please review Vittorio's proposal below? We are implementing 
> the BioSchemas into production in the BBMRI-ERIC Directory and the 
> initial mapping we have done almost 3 years back are no longer usable - 
> and thus Vittorio has created the proposal below and we would like to 
> confirm it before continuing.
> 
> Thanks,
> Petr
> 
> 
> 
> **Assoc. Prof. *RNDr. Petr Holub, Ph.D.
> *Senior IT/Data Protection Manager*
> 
> BBMRI-ERIC*  | Neue Stiftingtalstrasse 2/B/6 |  8010 Graz | AUSTRIA
> Phone: +43 316 34 99 17-18  | Fax: +43 316 34 99 17-99 | Mobile: +43 664 
> 88 72 18 77
> Skype:holubp | petr.holub@bbmri-eric.eu 
> <mailto:petr.holub@bbmri-eric.eu> | www.bbmri-eric.eu 
> <http://www.bbmri-eric.eu><https://mail.acpcloud.de/owa/redir.aspx?C=tQtD-G9C_kuPP8hViFQ4hgNjuhtf_dEI0JIE-vC5gXhf36JcThZMI5N8J9ocveR1mgFita1orqo.&URL=http%3a%2f%2fwww.bbmri-eric.eu%2f>
> 
> ------------------------------------------------------------------------
> *From:* Vittorio Meloni <vittorio.meloni@crs4.it>
> *Sent:* Tuesday, March 30, 2021 14:09
> *To:* public-bioschemas@w3.org <public-bioschemas@w3.org>
> *Subject:* Advice for applying Bioschemas to BBMRI Directory
> Dear Bioschemas Members,
> I am Vittorio Meloni and I'm collaborating with BBMRI to add Bioschemas 
> into the Biobanks' Directory. In particular, I need to represent 
> Biobanks and Collections concepts, which are compliant with the MIABIS 
> 2.0 model: the Biobank is the organization that stores samples and data 
> related to the samples while a Collection is the set of samples. 
> According to these definitions, I mapped the Biobank to DataCatalog, 
> using the "provider" attribute to describe the organization and the 
> "dataset" attribute for the list of Collections, and the Collection to a 
> Dataset. Do you think this mapping would be correct?
> Another issue I have is how to add additional properties to a 
> Collection: for example, how can I express that a Collection collects 
> materials as DNA? With the DataRecord I could use additionalProperty, 
> but it is Deprecated now. I've found the variableMeasured property but 
> I'm not sure it fits correctly. Do you think that's the right way to go?
> 
> Any suggestion or comment would be appreciated.
> Thank you,
> Vittorio
> 
> -- 
> Vittorio Meloni
> Data Intensive Computing - Digital Health Group
> CRS4 - Centro di Ricerche, Sviluppo e Studi Superiori della Sardegna
> POLARIS, Edificio 1, 09010 PULA (CA - Italy)
> 
> Email: vittorio.meloni@crs4.it 
> <https://webmail.crs4.it/imp/message.php?index=221#>

-- 

	*Jerven Tjalling Bolleman*
Principal Software Developer
*SIB | Swiss Institute of Bioinformatics*
1, rue Michel Servet - CH 1211 Geneva 4 - Switzerland
t +41 22 379 58 85
Jerven.Bolleman@sib.swiss - www.sib.swiss

Received on Tuesday, 6 April 2021 12:12:05 UTC