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Re: Advice for applying Bioschemas to BBMRI Directory

From: Petr Holub <petr.holub@bbmri-eric.eu>
Date: Tue, 6 Apr 2021 12:07:44 +0000
To: Vittorio Meloni <vittorio.meloni@crs4.it>, "public-bioschemas@w3.org" <public-bioschemas@w3.org>
Message-ID: <VI1PR07MB4061E2CABD5593B0DF26B027C3769@VI1PR07MB4061.eurprd07.prod.outlook.com>
Dear all,

could you please review Vittorio's proposal below? We are implementing the BioSchemas into production in the BBMRI-ERIC Directory and the initial mapping we have done almost 3 years back are no longer usable - and thus Vittorio has created the proposal below and we would like to confirm it before continuing.


Assoc. Prof. RNDr. Petr Holub, Ph.D.
Senior IT/Data Protection Manager

BBMRI-ERIC  | Neue Stiftingtalstrasse 2/B/6 |  8010 Graz | AUSTRIA
Phone: +43 316 34 99 17-18  | Fax: +43 316 34 99 17-99 | Mobile: +43 664 88 72 18 77
Skype:holubp | petr.holub@bbmri-eric.eu<mailto:petr.holub@bbmri-eric.eu> | www.bbmri-eric.eu<http://www.bbmri-eric.eu><https://mail.acpcloud.de/owa/redir.aspx?C=tQtD-G9C_kuPP8hViFQ4hgNjuhtf_dEI0JIE-vC5gXhf36JcThZMI5N8J9ocveR1mgFita1orqo.&URL=http%3a%2f%2fwww.bbmri-eric.eu%2f>

From: Vittorio Meloni <vittorio.meloni@crs4.it>
Sent: Tuesday, March 30, 2021 14:09
To: public-bioschemas@w3.org <public-bioschemas@w3.org>
Subject: Advice for applying Bioschemas to BBMRI Directory

Dear Bioschemas Members,
I am Vittorio Meloni and I'm collaborating with BBMRI to add Bioschemas into the Biobanks' Directory. In particular, I need to represent Biobanks and Collections concepts, which are compliant with the MIABIS 2.0 model: the Biobank is the organization that stores samples and data related to the samples while a Collection is the set of samples. According to these definitions, I mapped the Biobank to DataCatalog, using the "provider" attribute to describe the organization and the "dataset" attribute for the list of Collections, and the Collection to a Dataset. Do you think this mapping would be correct?
Another issue I have is how to add additional properties to a Collection: for example, how can I express that a Collection collects materials as DNA? With the DataRecord I could use additionalProperty, but it is Deprecated now. I've found the variableMeasured property but I'm not sure it fits correctly. Do you think that's the right way to go?

Any suggestion or comment would be appreciated.
Thank you,

Vittorio Meloni
Data Intensive Computing - Digital Health Group
CRS4 - Centro di Ricerche, Sviluppo e Studi Superiori della Sardegna
POLARIS, Edificio 1, 09010 PULA (CA - Italy)

Email: vittorio.meloni@crs4.it<https://webmail.crs4.it/imp/message.php?index=221#>
Received on Tuesday, 6 April 2021 12:08:02 UTC

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