Re: Protein representation with a Bioschemas context ()

PS: The example is now working on the JSON-LD Playground site
http://tinyurl.com/y9mu423y

On 10 Nov 2017, at 10:38, Gray, Alasdair J G <A.J.G.Gray@hw.ac.uk<mailto:A.J.G.Gray@hw.ac.uk>> wrote:


On 10 Nov 2017, at 10:14, Melanie Courtot <mcourtot@ebi.ac.uk<mailto:mcourtot@ebi.ac.uk>> wrote:

Hi,

I thought we were converging towards defining aliases such as "transcribedfrom" and then have the context point to possible ontologies where "transcribedFrom" could be defined, but the emails excerpts below seem to indicate a preferred IRI would need to be chosen?

Each profile would need to choose a single IRI for each of the terms used within it, i.e. in the case of transcribedFrom this is currently
http://semanticscience.org/resource/SIO_010081
It is having consensus on these terms that will provide the benefit that we envision.

By using a shared context we would simplify the creation of the markup as people can just reference the common context.

Would it be possible to have an example with the latest consensus? It would be easier to make sure we are all on the same page to comment on.

The example Anders sent would be the current proposal
https://github.com/ariutta/specifications/blob/ariutta-demo/Protein/examples/ProteinEntityNew.json

With the context being
https://github.com/ariutta/specifications/blob/ariutta-demo/context.jsonld
I have deployed this context at the below but it is not quite working yet.
bioschemas.org/Protein/context.jsonld<http://bioschemas.org/Protein/context.jsonld>

Alasdair

Alasdair J G Gray

Fellow of the Higher Education Academy
Assistant Professor in Computer Science,
School of Mathematical and Computer Sciences
(Athena SWAN Bronze Award)
Heriot-Watt University, Edinburgh UK.

Email: A.J.G.Gray@hw.ac.uk<mailto:A.J.G.Gray@hw.ac.uk>
Web: http://www.macs.hw.ac.uk/~ajg33
ORCID: http://orcid.org/0000-0002-5711-4872
Office: Earl Mountbatten Building 1.39
Twitter: @gray_alasdair

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Alasdair J G Gray

Fellow of the Higher Education Academy
Assistant Professor in Computer Science,
School of Mathematical and Computer Sciences
(Athena SWAN Bronze Award)
Heriot-Watt University, Edinburgh UK.

Email: A.J.G.Gray@hw.ac.uk<mailto:A.J.G.Gray@hw.ac.uk>
Web: http://www.macs.hw.ac.uk/~ajg33
ORCID: http://orcid.org/0000-0002-5711-4872
Office: Earl Mountbatten Building 1.39
Twitter: @gray_alasdair