Re: Protein representation with a Bioschemas context ()

On 10 Nov 2017, at 10:14, Melanie Courtot <mcourtot@ebi.ac.uk<mailto:mcourtot@ebi.ac.uk>> wrote:

Hi,

I thought we were converging towards defining aliases such as "transcribedfrom" and then have the context point to possible ontologies where "transcribedFrom" could be defined, but the emails excerpts below seem to indicate a preferred IRI would need to be chosen?

Each profile would need to choose a single IRI for each of the terms used within it, i.e. in the case of transcribedFrom this is currently
http://semanticscience.org/resource/SIO_010081
It is having consensus on these terms that will provide the benefit that we envision.

By using a shared context we would simplify the creation of the markup as people can just reference the common context.

Would it be possible to have an example with the latest consensus? It would be easier to make sure we are all on the same page to comment on.

The example Anders sent would be the current proposal
https://github.com/ariutta/specifications/blob/ariutta-demo/Protein/examples/ProteinEntityNew.json

With the context being
https://github.com/ariutta/specifications/blob/ariutta-demo/context.jsonld
I have deployed this context at the below but it is not quite working yet.
bioschemas.org/Protein/context.jsonld<http://bioschemas.org/Protein/context.jsonld>

Alasdair

Alasdair J G Gray

Fellow of the Higher Education Academy
Assistant Professor in Computer Science,
School of Mathematical and Computer Sciences
(Athena SWAN Bronze Award)
Heriot-Watt University, Edinburgh UK.

Email: A.J.G.Gray@hw.ac.uk<mailto:A.J.G.Gray@hw.ac.uk>
Web: http://www.macs.hw.ac.uk/~ajg33
ORCID: http://orcid.org/0000-0002-5711-4872
Office: Earl Mountbatten Building 1.39
Twitter: @gray_alasdair

________________________________

Heriot-Watt University is The Times & The Sunday Times International University of the Year 2018

Founded in 1821, Heriot-Watt is a leader in ideas and solutions. With campuses and students across the entire globe we span the world, delivering innovation and educational excellence in business, engineering, design and the physical, social and life sciences.

This email is generated from the Heriot-Watt University Group, which includes:

  1.  Heriot-Watt University, a Scottish charity registered under number SC000278
  2.  Edinburgh Business School a Charity Registered in Scotland, SC026900. Edinburgh Business School is a company limited by guarantee, registered in Scotland with registered number SC173556 and registered office at Heriot-Watt University Finance Office, Riccarton, Currie, Midlothian, EH14 4AS
  3.  Heriot- Watt Services Limited (Oriam), Scotland's national performance centre for sport. Heriot-Watt Services Limited is a private limited company registered is Scotland with registered number SC271030 and registered office at Research & Enterprise Services Heriot-Watt University, Riccarton, Edinburgh, EH14 4AS.

The contents (including any attachments) are confidential. If you are not the intended recipient of this e-mail, any disclosure, copying, distribution or use of its contents is strictly prohibited, and you should please notify the sender immediately and then delete it (including any attachments) from your system.

Received on Friday, 10 November 2017 10:38:43 UTC