Re: Protein representation with a Bioschemas context ()

Thanks, that great and really helpful.

Why couldn't we allow different projects to define their own context? 
For example, I modified the one provided in the example to use other 
ontologies: http://tinyurl.com/yd5snze2
(Note I'm not saying those should be used, I just picked alternative to 
the existing ones for gene, protein and transcribedFrom as an example)

Bioschemas can then offer a context by default while leaving the 
possibility for others to chose alternatives. Would it be a problem for 
the validators to only consider 
https://github.com/ariutta/specifications/blob/ariutta-demo/Protein/examples/ProteinEntityNew.json 
when checking whether entities comply with the profile?

Cheers,
Melanie

On 10/11/2017 10:55, Gray, Alasdair J G wrote:
> PS: The example is now working on the JSON-LD Playground site
> http://tinyurl.com/y9mu423y
>
>> On 10 Nov 2017, at 10:38, Gray, Alasdair J G <A.J.G.Gray@hw.ac.uk 
>> <mailto:A.J.G.Gray@hw.ac.uk>> wrote:
>>
>>>
>>> On 10 Nov 2017, at 10:14, Melanie Courtot <mcourtot@ebi.ac.uk 
>>> <mailto:mcourtot@ebi.ac.uk>> wrote:
>>>
>>> Hi,
>>>
>>> I thought we were converging towards defining aliases such as 
>>> "transcribedfrom" and then have the context point to possible 
>>> ontologies where "transcribedFrom" could be defined, but the emails 
>>> excerpts below seem to indicate a preferred IRI would need to be chosen?
>>
>> Each profile would need to choose a single IRI for each of the terms 
>> used within it, i.e. in the case of transcribedFrom this is currently
>> http://semanticscience.org/resource/SIO_010081
>> It is having consensus on these terms that will provide the benefit 
>> that we envision.
>>
>> By using a shared context we would simplify the creation of the 
>> markup as people can just reference the common context.
>>>
>>> Would it be possible to have an example with the latest consensus? 
>>> It would be easier to make sure we are all on the same page to 
>>> comment on.
>>
>> The example Anders sent would be the current proposal
>> https://github.com/ariutta/specifications/blob/ariutta-demo/Protein/examples/ProteinEntityNew.json
>>
>> With the context being
>> https://github.com/ariutta/specifications/blob/ariutta-demo/context.jsonld
>> I have deployed this context at the below but it is not quite working 
>> yet.
>> bioschemas.org/Protein/context.jsonld 
>> <http://bioschemas.org/Protein/context.jsonld>
>>
>> Alasdair
>>
>> Alasdair J G Gray
>>
>> Fellow of the Higher Education Academy
>> Assistant Professor in Computer Science,
>> School of Mathematical and Computer Sciences
>> (Athena SWAN Bronze Award)
>> Heriot-Watt University, Edinburgh UK.
>>
>> Email: A.J.G.Gray@hw.ac.uk <mailto:A.J.G.Gray@hw.ac.uk>
>> Web: http://www.macs.hw.ac.uk/~ajg33 <http://www.macs.hw.ac.uk/%7Eajg33>
>> ORCID: http://orcid.org/0000-0002-5711-4872
>> Office: Earl Mountbatten Building 1.39
>> Twitter: @gray_alasdair
>>
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>
> Alasdair J G Gray
>
> Fellow of the Higher Education Academy
> Assistant Professor in Computer Science,
> School of Mathematical and Computer Sciences
> (Athena SWAN Bronze Award)
> Heriot-Watt University, Edinburgh UK.
>
> Email: A.J.G.Gray@hw.ac.uk <mailto:A.J.G.Gray@hw.ac.uk>
> Web: http://www.macs.hw.ac.uk/~ajg33 <http://www.macs.hw.ac.uk/%7Eajg33>
> ORCID: http://orcid.org/0000-0002-5711-4872
> Office: Earl Mountbatten Building 1.39
> Twitter: @gray_alasdair
>