- From: David Booth <david@dbooth.org>
- Date: Thu, 16 Apr 2020 17:17:00 -0400
- To: www-archive <www-archive@w3.org>
- Message-ID: <4c48c2a6-afa2-fb80-16d4-236577d1d59d@dbooth.org>
Slides from Sebastian's presentation last week.
-------- Forwarded Message --------
Subject: Re: Working on CORD-19 semantic annotations?
Date: Thu, 16 Apr 2020 13:35:51 -0700
From: Sebastian Kohlmeier <sebastiank@allenai.org>
To: David Booth <david@dbooth.org>
Hi David,
Yes, you are welcome to post the slides publicly.
Thanks for checking!
Sebastian
On Thu, Apr 16, 2020 at 1:09 PM David Booth <david@dbooth.org
<mailto:david@dbooth.org>> wrote:
Hi Sebastian,
okay if I post your slides publicly, or do you already have a URL
for them?
thanks,
David
On 4/7/20 10:26 AM, Sebastian Kohlmeier wrote:
> I've attached a brief deck that provides an overview of Semantic
Scholar
> and our CORD-19 efforts. Looking forward to connecting shortly!
>
> Sebastian
>
> On Tue, Apr 7, 2020 at 7:08 AM Malec, Scott Alexander
<SAM413@pitt.edu <mailto:SAM413@pitt.edu>
> <mailto:SAM413@pitt.edu <mailto:SAM413@pitt.edu>>> wrote:
>
> What I have to share thus far. Apologies for the
mess/work-in-progress!
> --Scott
>
------------------------------------------------------------------------
> *From:* David Booth <david@dbooth.org
<mailto:david@dbooth.org> <mailto:david@dbooth.org
<mailto:david@dbooth.org>>>
> *Sent:* Tuesday, April 7, 2020 9:54 AM
> *To:* Sebastian Kohlmeier <sebastiank@allenai.org
<mailto:sebastiank@allenai.org>
> <mailto:sebastiank@allenai.org
<mailto:sebastiank@allenai.org>>>; Lucy Lu Wang <lucyw@allenai.org
<mailto:lucyw@allenai.org>
> <mailto:lucyw@allenai.org <mailto:lucyw@allenai.org>>>; Kyle
Lo <kylel@allenai.org <mailto:kylel@allenai.org>
> <mailto:kylel@allenai.org <mailto:kylel@allenai.org>>>; Jim
McCusker <mccusker@gmail.com <mailto:mccusker@gmail.com>
> <mailto:mccusker@gmail.com <mailto:mccusker@gmail.com>>>;
Malec, Scott Alexander
> <SAM413@pitt.edu <mailto:SAM413@pitt.edu>
<mailto:SAM413@pitt.edu <mailto:SAM413@pitt.edu>>>;
> gilles.vandewiele@ugent.be <mailto:gilles.vandewiele@ugent.be>
<mailto:gilles.vandewiele@ugent.be <mailto:gilles.vandewiele@ugent.be>>
> <gilles.vandewiele@ugent.be
<mailto:gilles.vandewiele@ugent.be>
<mailto:gilles.vandewiele@ugent.be
<mailto:gilles.vandewiele@ugent.be>>>
> *Cc:* Guoqian Jiang <jiang.guoqian@mayo.edu
<mailto:jiang.guoqian@mayo.edu>
> <mailto:jiang.guoqian@mayo.edu
<mailto:jiang.guoqian@mayo.edu>>>; Harold Solbrig <solbrig@jhu.edu
<mailto:solbrig@jhu.edu>
> <mailto:solbrig@jhu.edu <mailto:solbrig@jhu.edu>>>; Todor
Primov <todor.primov@ontotext.com <mailto:todor.primov@ontotext.com>
> <mailto:todor.primov@ontotext.com
<mailto:todor.primov@ontotext.com>>>
> *Subject:* Re: Working on CORD-19 semantic annotations?
> My slides are attached -- choice of PDF or PowerPoint.
>
> Thanks,
> David
>
> On 4/7/20 9:46 AM, David Booth wrote:
> > Reminder: Please send slides in advance. Even one slide
with your name,
> > affiliation and a few bullet points can be helpful in
getting to know
> > each other.
> >
> > We will use this google doc for real-time collaborative
note taking:
> >
https://nam05.safelinks.protection.outlook.com/?url=https%3A%2F%2Ftinyurl.com%2Fv2zjdnk&data=02%7C01%7Csam413%40pitt.edu%7C8c381e36b42c47c9392408d7dafb3cf7%7C9ef9f489e0a04eeb87cc3a526112fd0d%7C1%7C0%7C637218645369518991&sdata=s%2FdIXLYKMWQi%2BP0HJ1DFl3mMSYrcxxvSV3fA3zYMgdk%3D&reserved=0
> > You can also help to fill in the bottom portion with basic
info about
> > your project.
> >
> > Thanks,
> > David Booth
> >
> > On 4/6/20 12:45 PM, David Booth wrote:
> >> Hi All,
> >>
> >> This call will be tomorrow (Tue) 11am Boston time, using
this google
> >> hangout:
> >>
https://nam05.safelinks.protection.outlook.com/?url=https%3A%2F%2Ftinyurl.com%2Ffhirrdf&data=02%7C01%7Csam413%40pitt.edu%7C8c381e36b42c47c9392408d7dafb3cf7%7C9ef9f489e0a04eeb87cc3a526112fd0d%7C1%7C0%7C637218645369518991&sdata=H6jXsN2SnGxac5HzhA44U9Dhmn9P%2FNrkeQWBtyLeeHI%3D&reserved=0
> >> I will send a calendar invite separately.
> >>
> >> In preparation:
> >>
> >> 1. Please prepare a few slides that describe your project,
and email
> >> them to all of the above recipients (reply-all) one hour
before the
> >> call. I will also post them publicly later. We'll start
with
> >> introductions, and each group describing what they're
doing, 5 minutes
> >> per group.
> >>
> >> 2. Please test google hangouts in advance, if you have not
used it
> >> before.
> >>
https://nam05.safelinks.protection.outlook.com/?url=https%3A%2F%2Fsupport.mastered.com%2Farticle%2F212-using-google-hangouts&data=02%7C01%7Csam413%40pitt.edu%7C8c381e36b42c47c9392408d7dafb3cf7%7C9ef9f489e0a04eeb87cc3a526112fd0d%7C1%7C0%7C637218645369518991&sdata=UgLzi5KQ4rBEkQgqWjlOFMNN78em2iw10hcTNTCvGq8%3D&reserved=0
> >>
> >> So far, we know of four groups doing semantic annotation
of CORD-19,
> >> represented by:
> >>
> >> - Gilles Vandewiele -- (project name?)
> >>
> >> - David Booth -- FHIRCat project
> >>
> >> - Jim McCusker -- (project name?)
> >>
> >> - Scott Malec -- (project name?)
> >>
> >> In addition, I have invited:
> >>
> >> - Sebastian Kohlmeier and others from the Allen
Institute, which
> >> produces CORD-19.
> >>
> >> - Todor Primov from Ontotext, who have been helping us
with our
> >> GraphDB RDF database.
> >>
> >> Thanks,
> >> David Booth
> >>
> >> On 4/3/20 11:18 AM, Sebastian Kohlmeier wrote:
> >>> Hi David,
> >>>
> >>> Thank you for the update! I've added Lucy and Kyle from our
> >>> research team to see if they are also interested in
joining (I just
> >>> responded to the poll with my availability).
> >>>
> >>> Looking forward to it!
> >>>
> >>> Sebastian
> >>>
> >>> On Fri, Apr 3, 2020 at 5:41 AM David Booth
<david@dbooth.org <mailto:david@dbooth.org> <mailto:david@dbooth.org
<mailto:david@dbooth.org>>
> >>> <mailto:david@dbooth.org <mailto:david@dbooth.org>>> wrote:
> >>>
> >>> FYI, in case you want to join the call. But either
way I'll let you
> >>> know what projects we learn about.
> >>>
> >>> -------- Forwarded Message --------
> >>> Subject: Working on CORD-19 semantic annotations?
> >>> Date: Thu, 2 Apr 2020 22:29:05 -0400
> >>> From: David Booth <david@dbooth.org
<mailto:david@dbooth.org> <mailto:david@dbooth.org
<mailto:david@dbooth.org>> <mailto:david@dbooth.org
<mailto:david@dbooth.org>>>
> >>> To: w3c semweb HCLS <public-semweb-lifesci@w3.org
<mailto:public-semweb-lifesci@w3.org>
<mailto:public-semweb-lifesci@w3.org
<mailto:public-semweb-lifesci@w3.org>>
> >>> <mailto:public-semweb-lifesci@w3.org
<mailto:public-semweb-lifesci@w3.org>>>
> >>>
> >>> The CORD-19 dataset is a dataset of 44k journal
articles on COVID-19
> >>> and
> >>> related topics. We previously announced our
CORD19-on-FHIR release,
> >>> which adds semantic annotations to the CORD-19
dataset, using
> >>> FHIR RDF:
> >>>
https://nam05.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Ffhircat%2FCORD-19-on-FHIR&data=02%7C01%7Csam413%40pitt.edu%7C8c381e36b42c47c9392408d7dafb3cf7%7C9ef9f489e0a04eeb87cc3a526112fd0d%7C1%7C0%7C637218645369518991&sdata=FrteeK5gY5Tn3N4O%2FEk3ImP7z%2FbFhyOOX5u0UT%2Ba8pw%3D&reserved=0
> >>>
> >>> Since other efforts using CORD-19 have also started
elsewhere, to
> >>> coordinate efforts, we would like to have a web
teleconference with
> >>> anyone else who is working on semantic annotation of
the CORD-19
> >>> dataset.
> >>>
> >>> If you are working on semantic annotation of CORD-19,
please: (a)
> >>> let me
> >>> know; and (b) answer the following doodle poll, for
scheduling:
> >>>
https://nam05.safelinks.protection.outlook.com/?url=https%3A%2F%2Fdoodle.com%2Fpoll%2Fkpfpcix6gvbtkk8y&data=02%7C01%7Csam413%40pitt.edu%7C8c381e36b42c47c9392408d7dafb3cf7%7C9ef9f489e0a04eeb87cc3a526112fd0d%7C1%7C0%7C637218645369518991&sdata=fTZc4kK6F%2FWlCngNvFyu06F0fdTbrVnWDJqgtnLipV4%3D&reserved=0
> >>>
> >>> Thanks,
> >>> David Booth <david@dbooth.org
<mailto:david@dbooth.org> <mailto:david@dbooth.org
<mailto:david@dbooth.org>>
> <mailto:david@dbooth.org <mailto:david@dbooth.org>>>, Yosemite
> >>> Project
> >>> Harold Solbrig, Johns-Hopkins University
> >>> Guoqian Jiang, Mayo Clinic
> >>>
> >>>
> >>>
> >>> --
> >>> Sebastian Kohlmeier
> >>>
> >>> /Sr. Manager - Business Operations | Semantic Scholar/
> >>> /Allen Institute for AI (AI2)/
> >>> /sebastiank@allenai.org <mailto:sebastiank@allenai.org>
<mailto:sebastiank@allenai.org <mailto:sebastiank@allenai.org>>
> <mailto:sebastiank@allenai.org
<mailto:sebastiank@allenai.org>> | 425-985-7286/
>
>
>
> --
> Sebastian Kohlmeier
>
> /Sr. Manager - Business Operations | Semantic Scholar/
> /Allen Institute for AI (AI2)/
> /sebastiank@allenai.org <mailto:sebastiank@allenai.org>
<mailto:sebastiank@allenai.org <mailto:sebastiank@allenai.org>> |
425-985-7286/
--
Sebastian Kohlmeier
/Sr. Manager - Business Operations | Semantic Scholar/
/Allen Institute for AI (AI2)/
/sebastiank@allenai.org <mailto:sebastiank@allenai.org> | 425-985-7286/
Attachments
- application/pdf attachment: Semantic_Scholar_-_CORD-19_Overview.pdf
Received on Thursday, 16 April 2020 21:17:27 UTC