Re: Working on CORD-19 semantic annotations?

Hi David,

Nice to exchange emails with you again, I hope you are well !

Inline:

João Luiz Rebelo Moreira, PhD
*Assistant Professor*
Services and Cyber-Security (SCS)
Electrical Engineering, Mathematics and Computer Science
University of Twente, PO Box 217
7500AE Enschede, The Netherlands
Office: Zilverling 2009
E: j <l.o.bonino@utwente.nl>.luizrebelomoreira@utwente.nl


On Wed, 8 Apr 2020 at 23:10, David Booth <david@dbooth.org> wrote:

> Hi João,
>
> On 4/7/20 11:36 AM, João Moreira (UTwente) wrote:
> > Hi David,
> >
> > Here in the University of Twente we're participating in the Virus
> > Outbreak Data Network (VODAN) of GO-FAIR:
> > https://www.go-fair.org/implementation-networks/overview/vodan/
>
> Glad to hear of your work!
>

>> Please, consider in participating in this call tomorrow:
https://www.sdsc.edu/services/data_science/research_data_services.html


>
> > [ . . . ]
> > It would be interesting to come with some alignments between FHIR RDF
> > (predicates used in CORD-19-on-FHIR) and this CRF semantic model.
>
> That sounds like a good topic to discuss on a FHIR RDF call.  Those
> calls have been temporarily preempted by COVID-19 efforts, but maybe we
> should try to fit one in, to discuss this.  In the meantime you might
> want to look at what's in our CORD-19-on-FHIR data:
> https://github.com/fhircat/CORD-19-on-FHIR
>
> Guoqian or Harold (copied) might also have other ideas.
>

>> Definitely! I looked into the datasets some weeks ago and even created
this issue there:
https://github.com/fhircat/CORD-19-on-FHIR/issues/9

Since I've been working with IoT in the past years, it would be interesting
for me to try align it with a "sensor ontology" (like SSN/SOSA or SAREF).
That's why I asked for the link between the procedures and the devices
involved on them, probably through:
Procedure.focalDevice

And/or relate with medications with devices... Do you suggest any links to
sensor information?

Cheers!

Joao


>
> Thanks,
> David Booth
>
> >
> > Kind regards,
> >
> > João Luiz Rebelo Moreira, PhD
> > /Assistant Professor/
> > Services and Cyber-Security (SCS)
> > Electrical Engineering, Mathematics and Computer Science
> > University of Twente, PO Box 217
> > 7500AE Enschede, The Netherlands
> > Office: Zilverling 2009
> > E: j <mailto:l.o.bonino@utwente.nl>.luizrebelomoreira@utwente.nl
> > <mailto:luizrebelomoreira@utwente.nl>
> >
> >
> > On Mon, 6 Apr 2020 at 18:48, David Booth <david@dbooth.org
> > <mailto:david@dbooth.org>> wrote:
> >
> >     This call will be tomorrow (Tuesday) 11am Boston time.  If you are
> >     doing
> >     semantic annotation of CORD-19 and did not already respond, please
> >     so do
> >     now so that I can send you call details.
> >
> >     Thanks,
> >     David Booth
> >
> >     On 4/2/20 10:29 PM, David Booth wrote:
> >      > The CORD-19 dataset is a dataset of 44k journal articles on
> >     COVID-19 and
> >      > related topics.  We previously announced our CORD19-on-FHIR
> release,
> >      > which adds semantic annotations to the CORD-19 dataset, using
> >     FHIR RDF:
> >      > https://github.com/fhircat/CORD-19-on-FHIR
> >      >
> >      > Since other efforts using CORD-19 have also started elsewhere, to
> >      > coordinate efforts, we would like to have a web teleconference
> with
> >      > anyone else who is working on semantic annotation of the CORD-19
> >     dataset.
> >      >
> >      > If you are working on semantic annotation of CORD-19, please: (a)
> >     let me
> >      > know; and (b) answer the following doodle poll, for scheduling:
> >      > https://doodle.com/poll/kpfpcix6gvbtkk8y
> >      >
> >      > Thanks,
> >      > David Booth <david@dbooth.org <mailto:david@dbooth.org>>,
> >     Yosemite Project
> >      > Harold Solbrig, Johns-Hopkins University
> >      > Guoqian Jiang, Mayo Clinic
> >      >
> >
>