Re: [EXTERNAL] Re: Working on CORD-19 semantic annotations?

Mellisa,

This looks great. We should make efforts to have all semantic annotations/knowledge graphs interoperable using ontologies including open ontologies. From what I am seeing, the research community is actively exploring the COVID-19 knowledge graphs in two directions: 1) extracting clinical evidence related to COVID-19; and 2) mining potential biological and genetic mechanisms related to  SARS-CoV-2. Hopefully, all these efforts can be coordinated with synergies.

Thanks,

-Guoqian

From: Melissa Haendel <haendel@ohsu.edu<mailto:haendel@ohsu.edu>>
Date: Monday, April 6, 2020 at 11:54 AM
To: David Booth <david@dbooth.org<mailto:david@dbooth.org>>
Cc: w3c semweb HCLS <public-semweb-lifesci@w3.org<mailto:public-semweb-lifesci@w3.org>>
Subject: [EXTERNAL] Re: Working on CORD-19 semantic annotations?
Resent-From: <public-semweb-lifesci@w3.org<mailto:public-semweb-lifesci@w3.org>>
Resent-Date: Monday, April 6, 2020 at 11:55 AM

Perhaps some of the next steps can be to include open ontologies, so that the content can readily be combined and redistributed such as in knowledge graphs like this one:

https://douroucouli.wordpress.com/2020/04/06/building-a-covid-19-knowledge-graph/




On Apr 6, 2020, at 9:48 AM, David Booth <david@dbooth.org<mailto:david@dbooth.org>> wrote:

This call will be tomorrow (Tuesday) 11am Boston time.  If you are doing semantic annotation of CORD-19 and did not already respond, please so do now so that I can send you call details.

Thanks,
David Booth

On 4/2/20 10:29 PM, David Booth wrote:
The CORD-19 dataset is a dataset of 44k journal articles on COVID-19 and related topics.  We previously announced our CORD19-on-FHIR release, which adds semantic annotations to the CORD-19 dataset, using FHIR RDF:
https://github.com/fhircat/CORD-19-on-FHIR
Since other efforts using CORD-19 have also started elsewhere, to coordinate efforts, we would like to have a web teleconference with anyone else who is working on semantic annotation of the CORD-19 dataset.
If you are working on semantic annotation of CORD-19, please: (a) let me know; and (b) answer the following doodle poll, for scheduling:
https://doodle.com/poll/kpfpcix6gvbtkk8y
Thanks,
David Booth <david@dbooth.org<mailto:david@dbooth.org>>, Yosemite Project
Harold Solbrig, Johns-Hopkins University
Guoqian Jiang, Mayo Clinic


Melissa Haendel, PhD
Director of Translational Data Science, Oregon State University
Director of the Center for Data to Health, Oregon Health & Science University

melissa@tislab.org<mailto:melissa@tislab.org>
503-407-5970
www.monarchinitiative.org

Appointments:
Brandon White
admin@tislab.org<mailto:admin@tislab.org>