- From: David Booth <david@dbooth.org>
- Date: Sun, 21 Dec 2014 11:54:34 -0500
- To: public-semweb-lifesci@w3.org
Hi Matthias, You're touching on an important point that I think we have not yet articulated well enough. No *single* ontology will meet all of the diverse use cases that occur in healthcare and biomedical applications. That's obvious at one level, but less obvious -- though still true -- even when we look specifically at FHIR. Different ontologies will be needed for different FHIR use cases. This is one of the fundamental reasons that translations will always be needed, no matter how good our standardization efforts are. (See slides 10-17 of http://dbooth.org/2014/yosemite/yosemite-project-slides.pdf ) But if we acknowledge the inevitable need for model and vocabulary translations for specific use cases, and we avoid the trap of deluding ourselves into thinking that we *can* create a FHIR ontology that will meet all use cases ( see http://xkcd.com/927/ ), then I think we can create a FHIR ontology that meets the single most important use case that it MUST meet: that it can act as a hub ontology for FHIR within a hub-and-spoke collection of *other* ontologies that will better address specific diverse use cases. (See slide 35 of http://dbooth.org/2014/yosemite/yosemite-project-slides.pdf ) If we think of the FHIR ontology merely as a hub ontology (for FHIR -- not for everything) then I think our use of RDF can also help us escape the rat holes of the bike shed effect http://en.wikipedia.org/wiki/Parkinson%27s_law_of_triviality that result if we tried to make a FHIR ontology that is stylistically resonant with different people's favorite use cases. Standards committees can spend endless hours arguing over such "trivialities" as syntax and names for things -- matters that are trivial in one sense, because those details can be easily and mechanically swapped, but non-trivial in another sense if people need to use them directly, because of human factors. For spoke ontologies that will be touching end uses of the data, such matters become more important and thus *need* to be worked out as well as possible. But for a hub ontology whose primary purpose is simply to faithfully capture all of the semantics to support all of those spoke ontologies, those matters become less important. This is why I think we have a good chance of avoiding many of those bike shed debates if we think of our FHIR ontology in this way. Thanks, David Booth On 12/21/2014 01:08 AM, Matthias Samwald wrote: > Dear all, > > I have hardly participated in any of the calls lately and am coming at > this as a bit of an outsider. From my reading it indeed seems that any > officially accepted RDF version of FHIR data would use a code + code > system representation of 'concepts' from controlled vocabularies / > ontologies. In this case, however, I doubt that the added benefit of > having an RDF version is rather minimal and does not outweigh the added > complexity of an additional representation besides XML and JSON. > > The potential benefit of FHIR over other existing approaches (such as > some previous HL7 standards) is simplicity and accessibility through > standard tooling. > > The potential benefits of an RDF/OWL representation of health data are > bridging the data model-terminology gap, an intuitive representation of > medical information and easy querying and interlinking of the resulting > data via intuitive SPARQL queries. > > I hope I'm wrong, but my impression is that a simple, mostly syntactic > mapping of FHIR in RDF might end up having neither of these qualities, > combining the worst rather than the best of both worlds. A more > sophisticated mapping, on the other hand, might not allow round-tripping > the data and would probably not be accepted as part of the official FHIR > project. > > Am I overly sceptical here? > > With kind regards, > Matthias Samwald
Received on Sunday, 21 December 2014 16:55:02 UTC