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Re: Ontology Visualization with Domains and Ranges

From: Keiichiro Ono <keiono@gmail.com>
Date: Thu, 10 Oct 2013 23:13:12 +0200
Message-ID: <CAOWxDUcqBM1niwQru_AzmHtsa8BdCPVZPQwDnv-BjNytP9X3dw@mail.gmail.com>
To: Oliver Ruebenacker <curoli@gmail.com>
Cc: "Timothy W. Cook" <tim@mlhim.org>, public-semweb-lifesci <public-semweb-lifesci@w3.org>
Hi.

If you are looking for visualization tool for web browsers,
cytoscape.js is an option.

http://cytoscape.github.io/cytoscape.js/

It's a generic graph visualization library and has some more advanced
features than D3's force layout.
If you do not need advanced visualization features, but need a really
fast renderer, you can try sigma.js, too.

(Example:  http://chardonnay.ucsd.edu/dist/    The main tree is
rendered by sigma.js, and interaction views are rendered by
Cytoscape.js).

Thanks,

Kei
UCSD Trey Ideker Lab


2013/10/10 Oliver Ruebenacker <curoli@gmail.com>:
>
>      Hello Timothy,
>
>   I am using Protege, but I don't know how to do the kind of visualization
> I'm looking for in Protege. I know how to make graphs that show class
> hierarchies, but I don't know how to make graphs that show property domains,
> ranges and restrictions.
>
>      Best,
>      Oliver
>
>
>
> On Thu, Oct 10, 2013 at 12:46 PM, Timothy W. Cook <tim@mlhim.org> wrote:
>>
>> Have you tried Protege?
>> http://protege.stanford.edu/
>>
>>
>>
>> On Thu, Oct 10, 2013 at 1:33 PM, Oliver Ruebenacker <curoli@gmail.com>
>> wrote:
>>>
>>>
>>>      Hello,
>>>
>>>   I'm looking for a tool to visualize ontologies while showing domains
>>> and ranges of properties, and property restrictions.
>>>
>>>   For example, if a property p has domain A and range B, a graph where A
>>> and B are nodes and p is an edge from A to B would be useful.
>>>
>>>   Do you know any such tools? Thanks!
>>>
>>>      Best,
>>>      Oliver
>>>
>>> --
>>> Oliver Ruebenacker
>>> IT Project Lead at PanGenX (http://www.pangenx.com)
>>> Be always grateful, but never satisfied.
>>
>>
>>
>>
>> --
>> MLHIM VIP Signup: http://goo.gl/22B0U
>> ============================================
>> Timothy Cook, MSc           +55 21 94711995
>> MLHIM http://www.mlhim.org
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>
>
>
>
> --
> Oliver Ruebenacker
> IT Project Lead at PanGenX (http://www.pangenx.com)
> Be always grateful, but never satisfied.



-- 
Keiichiro Ono    http://keiono.github.io/
Received on Thursday, 10 October 2013 21:18:11 UTC

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