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Re: Prototype pharmacogenomics UI

From: Michel Dumontier <michel.dumontier@gmail.com>
Date: Sat, 27 Jul 2013 15:46:50 +0200
Message-ID: <CALcEXf6YeXTAk2eex-JgPDbxjhuiKLKORafpx0xovuiMq4mZcg@mail.gmail.com>
To: Richard Boyce <rdb20@pitt.edu>
Cc: "public-semweb-lifesci@w3.org" <public-semweb-lifesci@w3.org>
Hi Rich,
  Good work! It's nice to see custom interfaces over the RDF data, and to
use the drop box modality for getting quick answers. does anybody know of a
good framework to easily do this over sparql endpoints?


On Wed, Jul 17, 2013 at 11:39 PM, Richard Boyce <rdb20@pitt.edu> wrote:

> Hi,
> Our group at the U of Pitt and UPMC has made further progress on
> annotation of the pharmacogenomics statements in SPLs using a semantic
> model  [1, attached] and have developed a prototype user interface which is
> demonstrated in this video (<http://www.youtube.com/**watch?v=Te546vOiruo<http://www.youtube.com/watch?v=Te546vOiruo>>).
> The prototype dataset uses Open Data Annotation (sample graph attached) and
> an RDF representation of Structured Product Labels (http://purl.org/net/**
> linkedspls <http://purl.org/net/linkedspls>). Please let us know your
> thoughts.
> [1] Boyce, RD., Freimuth, RR., Romagnoli, KM., Pummer, T., Hochheiser, H.,
> Empey, PE. Toward semantic modeling of pharmacogenomic knowledge for
> clinical and translational decision support. Proceedings of the 2013 AMIA
> Summit on Translational Bioinformatics. San Francisco, March 2013.
> thanks,
> -Rich
> --
> Richard D Boyce, PhD
> Assistant Professor of Biomedical Informatics
> Faculty, Geriatric Pharmaceutical Outcomes and Gero-Informatics Research
> and Training Program
> University of Pittsburgh
> rdb20@pitt.edu
> Office: 412-648-9219
> Twitter: @bhaapgh

Michel Dumontier
Associate Professor of Bioinformatics, Carleton University
Chair, W3C Semantic Web for Health Care and the Life Sciences Interest Group
Received on Saturday, 27 July 2013 13:47:38 UTC

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