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Re: GO_REF URI prefix?

From: Chris Mungall <cjmungall@lbl.gov>
Date: Thu, 25 Jul 2013 17:49:42 -0700
Message-ID: <CAN9Aifsj1RmO-8DKFPnTho5ir63t0WnLXgVz2vg9hRBxOmKe8g@mail.gmail.com>
To: Jim McCusker <james.mccusker@yale.edu>
Cc: Joachim Baran <joachim.baran@gmail.com>, w3c semweb HCLS <public-semweb-lifesci@w3.org>
Obviously the current URLs aren't very linked data friendly. E.g.
http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000026

We would most likely end up having the prefix be something under the GO
purl, e.g.

http://purl.obolibrary.org/obo/go/reference/

It hasn't been our highest priority. We need to decide on the vocabulary
elements used. Question for this group: Are there any lightweight linked
data friendly reference management systems? E.g. something that can take a
mendeley group and render both rdf and (reasonably attractive) html?



On Thu, Jul 25, 2013 at 4:16 PM, Jim McCusker <james.mccusker@yale.edu>wrote:

> Ugh, those don't look like they're likely to be linked data, but I guess
> I'll go with it for now.
>
> Thanks,
> Jim
>
>
> On Thu, Jul 25, 2013 at 7:11 PM, Joachim Baran <joachim.baran@gmail.com>wrote:
>
>>
>> On 2013-07-25, at 7:02 PM, Jim McCusker <james.mccusker@yale.edu> wrote:
>>
>> GO_REF != GO. I don't see anything in identifiers.org about GO_REF.
>>
>>   Oh. Right. Then it is the URI you posted as it says in
>> http://www.geneontology.org/cgi-bin/xrefs.cgi#ref-g and
>> http://www.geneontology.org/doc/GO.xrf_abbs of course.
>>
>> Joachim
>>
>>
>
>
> --
> Jim McCusker
> Programmer Analyst
> Krauthammer Lab, Pathology Informatics
> Yale School of Medicine
> james.mccusker@yale.edu | (203) 785-4436
> http://krauthammerlab.med.yale.edu
>
> PhD Student
> Tetherless World Constellation
> Rensselaer Polytechnic Institute
> mccusj@cs.rpi.edu
> http://tw.rpi.edu
>
Received on Friday, 26 July 2013 00:50:24 UTC

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