W3C home > Mailing lists > Public > public-semweb-lifesci@w3.org > July 2013

RE: Bioontology.org and Linked Data?

From: Ray Fergerson <ray.fergerson@stanford.edu>
Date: Tue, 23 Jul 2013 15:51:28 -0700 (PDT)
To: "'Kingsley Idehen'" <kidehen@openlinksw.com>, "'HCLS'" <public-semweb-lifesci@w3.org>
Message-ID: <2aee5f59.00002af8.00000013@BMIR-MSOB-245.stanford.edu>
Yes you are correct that our existing REST API does not support the LOD
model very well. Our new API, still in alpha, should be much better in
this respect. The draft alpha documentation for this is often available
at:

http://stagedata.bioontology.org/documentation

Ray

-----Original Message-----
From: Kingsley Idehen [mailto:kidehen@openlinksw.com] 
Sent: Monday, July 22, 2013 9:10 AM
To: HCLS
Subject: Bioontology.org and Linked Data?

All,

I continue to struggle with the notion that Bioontology.org is a point 
of presence on the Web for Linked Data. The URIs associated with this 
data space don't adhere to Linked Data principles as far as I can tell.

Examples:

Vapour Analysis:

Link: 
http://linkeddata.uriburner.com:8000/vapour?uri=http%3A%2F%2Fpurl.bioontol
ogy.org%2Fontology%2FSNOMEDCT&defaultResponse=dontmind&userAgent=vapour.so
urceforge.net


CURL dump:

curl -IL http://purl.bioontology.org/ontology/SNOMEDCT
HTTP/1.1 302 Moved Temporarily
Date: Mon, 22 Jul 2013 16:07:41 GMT
Server: 1060 NetKernel v3.3 - Powered by Jetty
Location: http://bioportal.bioontology.org/virtual/1353
Content-Type: text/html; charset=iso-8859-1
X-Purl: 2.0; http://localhost:8080
Expires: Thu, 01 Jan 1970 00:00:00 GMT
Content-Length: 278
Connection: close

HTTP/1.1 302
Date: Mon, 22 Jul 2013 16:07:42 GMT
Server: Apache/2.2.15 (Red Hat)
X-Powered-By: Phusion Passenger (mod_rails/mod_rack) 3.0.18
Cache-Control: no-cache
X-Runtime: 16
Set-Cookie: _bp_session=99d9609355614f6a360069e5f39c239c; 
domain=.bioontology.org; path=/; HttpOnly
Location: http://bioportal.bioontology.org/visualize/46896
Content-Length: 114
Status: 302
Vary: Accept-Encoding
Connection: close
Content-Type: text/html; charset=utf-8

HTTP/1.1 301
Date: Mon, 22 Jul 2013 16:07:43 GMT
Server: Apache/2.2.15 (Red Hat)
X-Powered-By: Phusion Passenger (mod_rails/mod_rack) 3.0.18
Cache-Control: no-cache
X-Runtime: 38
Set-Cookie: _bp_session=8822d00fdb21e317cc987fcab42aa36b; 
domain=.bioontology.org; path=/; HttpOnly
Location: http://bioportal.bioontology.org/ontologies/46896?p=terms
Content-Length: 123
Status: 301
Vary: Accept-Encoding
Connection: close
Content-Type: text/html; charset=utf-8

HTTP/1.1 200
Date: Mon, 22 Jul 2013 16:07:43 GMT
Server: Apache/2.2.15 (Red Hat)
X-Powered-By: Phusion Passenger (mod_rails/mod_rack) 3.0.18
X-Runtime: 242
ETag: "0f524114ff5c5e8750df09fd898272aa"
Cache-Control: private, max-age=0, must-revalidate
Set-Cookie: _bp_session=b6f2b348269c8540cb63d4cc3721c854; 
domain=.bioontology.org; path=/; HttpOnly
Content-Length: 87778
Status: 200
Vary: Accept-Encoding
Connection: close
Content-Type: text/html; charset=utf-8

Macintosh-96:downloads kidehen$ curl -ILH "Accept: text/turtle" 
http://purl.bioontology.org/ontology/SNOMEDCT
HTTP/1.1 302 Moved Temporarily
Date: Mon, 22 Jul 2013 16:08:14 GMT
Server: 1060 NetKernel v3.3 - Powered by Jetty
Location: http://bioportal.bioontology.org/virtual/1353
Content-Type: text/html; charset=iso-8859-1
X-Purl: 2.0; http://localhost:8080
Expires: Thu, 01 Jan 1970 00:00:00 GMT
Content-Length: 278
Connection: close

HTTP/1.1 302
Date: Mon, 22 Jul 2013 16:08:14 GMT
Server: Apache/2.2.15 (Red Hat)
X-Powered-By: Phusion Passenger (mod_rails/mod_rack) 3.0.18
Cache-Control: no-cache
X-Runtime: 44
Set-Cookie: _bp_session=0c4cf299a4588d56d4f2500a0a655d13; 
domain=.bioontology.org; path=/; HttpOnly
Location: http://bioportal.bioontology.org/visualize/46896
Content-Length: 114
Status: 302
Vary: Accept-Encoding
Connection: close
Content-Type: text/html; charset=utf-8

HTTP/1.1 301
Date: Mon, 22 Jul 2013 16:08:15 GMT
Server: Apache/2.2.15 (Red Hat)
X-Powered-By: Phusion Passenger (mod_rails/mod_rack) 3.0.18
Cache-Control: no-cache
X-Runtime: 13
Set-Cookie: _bp_session=77c17bae2f459c01a3f03a849b820a7f; 
domain=.bioontology.org; path=/; HttpOnly
Location: http://bioportal.bioontology.org/ontologies/46896?p=terms
Content-Length: 123
Status: 301
Vary: Accept-Encoding
Connection: close
Content-Type: text/html; charset=utf-8

HTTP/1.1 200
Date: Mon, 22 Jul 2013 16:08:15 GMT
Server: Apache/2.2.15 (Red Hat)
X-Powered-By: Phusion Passenger (mod_rails/mod_rack) 3.0.18
X-Runtime: 190
ETag: "e851734fe4a58319c13adfde5a28d825"
Cache-Control: private, max-age=0, must-revalidate
Set-Cookie: _bp_session=7607b39fe6788d1a2ad1401e8fe85d43; 
domain=.bioontology.org; path=/; HttpOnly
Content-Length: 87778
Status: 200
Vary: Accept-Encoding
Connection: close
Content-Type: text/html; charset=utf-8

Macintosh-96:downloads kidehen$ curl -ILH "Accept: application/rdf+xml" 
http://purl.bioontology.org/ontology/SNOMEDCT
HTTP/1.1 302 Moved Temporarily
Date: Mon, 22 Jul 2013 16:08:32 GMT
Server: 1060 NetKernel v3.3 - Powered by Jetty
Location: http://bioportal.bioontology.org/virtual/1353
Content-Type: text/html; charset=iso-8859-1
X-Purl: 2.0; http://localhost:8080
Expires: Thu, 01 Jan 1970 00:00:00 GMT
Content-Length: 278
Connection: close

HTTP/1.1 302
Date: Mon, 22 Jul 2013 16:08:32 GMT
Server: Apache/2.2.15 (Red Hat)
X-Powered-By: Phusion Passenger (mod_rails/mod_rack) 3.0.18
Cache-Control: no-cache
X-Runtime: 12
Set-Cookie: _bp_session=f40903a37df9f53d14b22c866ebc56d0; 
domain=.bioontology.org; path=/; HttpOnly
Location: http://bioportal.bioontology.org/visualize/46896
Content-Length: 114
Status: 302
Vary: Accept-Encoding
Connection: close
Content-Type: text/html; charset=utf-8

HTTP/1.1 301
Date: Mon, 22 Jul 2013 16:08:34 GMT
Server: Apache/2.2.15 (Red Hat)
X-Powered-By: Phusion Passenger (mod_rails/mod_rack) 3.0.18
Cache-Control: no-cache
X-Runtime: 10
Set-Cookie: _bp_session=36b560642ed8da07ab12f1eab2bfb0b1; 
domain=.bioontology.org; path=/; HttpOnly
Location: http://bioportal.bioontology.org/ontologies/46896?p=terms
Content-Length: 123
Status: 301
Vary: Accept-Encoding
Connection: close
Content-Type: text/html; charset=utf-8

HTTP/1.1 500
Date: Mon, 22 Jul 2013 16:08:34 GMT
Server: Apache/2.2.15 (Red Hat)
X-Powered-By: Phusion Passenger (mod_rails/mod_rack) 3.0.18
Cache-Control: no-cache
Set-Cookie: _bp_session=f7fa9dcb15b8a9e6c3da2e48f76c0e53; 
domain=.bioontology.org; path=/; HttpOnly
Status: 500
Vary: Accept-Encoding
Connection: close
Content-Type: text/html; charset=utf-8

-- 

Regards,

Kingsley Idehen	
Founder & CEO
OpenLink Software
Company Web: http://www.openlinksw.com
Personal Weblog: http://www.openlinksw.com/blog/~kidehen
Twitter/Identi.ca handle: @kidehen
Google+ Profile: https://plus.google.com/112399767740508618350/about
LinkedIn Profile: http://www.linkedin.com/in/kidehen
Received on Tuesday, 23 July 2013 22:51:56 UTC

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