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Re: Ontology for Somatic Mutations?

From: Chris Baker <denguehost@gmail.com>
Date: Thu, 18 Jul 2013 17:44:03 -0300
Message-ID: <CALDyQEWKL1QXtEk2pxNdzS2iCJQwjfg97S8yyXY7LW8jtj8hYQ@mail.gmail.com>
To: "Lin MD, Simon" <LINMD.SIMON@mcrf.mfldclin.edu>
Cc: Oliver Ruebenacker <curoli@gmail.com>, public-semweb-lifesci <public-semweb-lifesci@w3.org>
There was a great short paper at ICBO2013 last week in Montreal
What’s in a Genotype?: An Ontological Characterization for Integration of
Genetic Variation Data
http://www.unbsj.ca/sase/csas/data/ws/icbo2013/papers/ec/icbo2013_submission_60.pdf


On Thu, Jul 18, 2013 at 5:38 PM, Lin MD, Simon <
LINMD.SIMON@mcrf.mfldclin.edu> wrote:

>  There is a sequence ontology used by ClinVar (NCBI) and others. ****
>
> ** **
>
> http://www.sequenceontology.org/****
>
> ** **
>
> We are planning to use it in our clinical genomics applications. ****
>
> ** **
>
> Simon****
>
> ** **
>
> ** **
>
> ==================================================****
>
> Simon Lin, MD | Director, Biomedical Informatics Research Center |
> Marshfield Clinic Research Foundation | 1000 N Oak Ave, Marshfield, WI
> 54449 | 715-221-7299 | Lin.Simon@mcrf.mfldclin.edu |
> www.marshfieldclinic.org/birc ****
>
> ** **
>
> ** **
>
> *From:* Oliver Ruebenacker [mailto:curoli@gmail.com]
> *Sent:* Thursday, July 18, 2013 3:00 PM
> *To:* public-semweb-lifesci
> *Subject:* Ontology for Somatic Mutations?****
>
> ** **
>
>
>      Hello,
>
>   Does any one know of an ontology for somatic mutations (including SNPs,
> chromosomal abnormalities, etc.)?
>
>      Take care
>      Oliver
>
> --
> Head of Systems Biology Task Force at PanGenX (http://www.pangenx.com)
> Any sufficiently advanced technology is indistinguishable from magic. ****
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-- 
Professor - Christopher J. O. Baker Ph. D.
Dept. Computer Science and Applied Statistics
University of New Brunswick, Canada
http://ca.linkedin.com/in/christopherjobaker
Google Scholar http://tinyurl.com/7lmyngx
Received on Thursday, 18 July 2013 20:44:30 UTC

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