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RE: [linkedlifew3cnote] EUROPE at 4PM CET!!!: Linked Life Data telco on Emerging Practices Note 11AM ET / *4PM CET* today

From: Michael Miller <Michael.Miller@systemsbiology.org>
Date: Mon, 29 Oct 2012 07:43:11 -0700
Message-ID: <815eba02aa42e84525d3f07f7d3f27c3@mail.gmail.com>
To: linkedlifedatapracticesnote@googlegroups.com, HCLS <public-semweb-lifesci@w3.org>
hi all,

here's my modified first paragraph to question 6:

No. However, the more entities and predicates there are in common between
two data sets, the easier those two datasets can be integrated or 'joined'
in a query, without loss of information or gain in noise.  The use of any
ontology when mapping data is already an improvement over tags or
unstructured text which often force integration to rely simply on lexical
or 'string' similarity. Indeed, if the same ontologies or URIs are used in
different data sets, the level of effort required is much less than if the
ontologies are different. But often there are domains that are represented
by different organizations, for instance the multiple protein and gene
databases that have existed side by side with separate funding, or
separate but related domains such as drug and adverse reaction knowledge
bases. In case different ontologies have been used in each data set, it is
sometimes possible to use alignment information between the two ontologies
in order to translate to a single mapping. This is the case in the above
example where the protein and gene databases have rich cross references
between them.

(if this looks useful, please add me to the list of contributors, thanks!)

cheers,
michael

Michael Miller
Software Engineer
Institute for Systems Biology

> -----Original Message-----
> From: linkedlifedatapracticesnote@googlegroups.com
> [mailto:linkedlifedatapracticesnote@googlegroups.com] On Behalf Of M.
> Scott Marshall
> Sent: Monday, October 29, 2012 6:11 AM
> To: HCLS; linkedlifedatapracticesnote@googlegroups.com
> Subject: [linkedlifew3cnote] EUROPE at 4PM CET!!!: Linked Life Data
telco on
> Emerging Practices Note 11AM ET / *4PM CET* today
>
> Dear Linked Lifers,
>
> [EUROPEANS note the time of the teleconference is 1 hour *EARLIER* due
> to Daylight Savings Time.]
>
> The last version version of the IG Note is attached. I will look at
> integrating Eric's Linked Data vs. SPARQL explanation into the intro
> (he sent it to the Expression RDF group/meeting by accident) and a few
> other odds and ends. Richard will also bring some edits later today.
>
> The minutes from the last call are here:
> http://www.w3.org/2012/10/01-hcls-minutes.html
>
> ACTIONS here:
>
> ACTION: Eric to add a bit to intro defining Linked Data vs. SPARQL
> [recorded in http://www.w3.org/2012/10/01-hcls-minutes.html#action01]
> ACTION: Michael to add a piece to Q6 mentioning the situation where
> RDF data have some unplanned overlap (example given was disease and
> drug). [recorded in
> http://www.w3.org/2012/10/01-hcls-minutes.html#action02]
> ACTION: Scott will keep adding straws to his strawman extension to Q6
> (incorporating the mapping approach described in "Translating..").
> [recorded in http://www.w3.org/2012/10/01-hcls-minutes.html#action03]
>
> -Scott
>
> Dial in info:
> Dial-In #: +1.617.761.6200 (Cambridge, MA)
>
> Participant Access Code: 4257 ("HCLS")
> IRC Channel: http://irc.w3.org port 6665 channel #HCLS
>
> ---------- Forwarded message ----------
> From: M. Scott Marshall <mscottmarshall@gmail.com>
> Date: Mon, Oct 1, 2012 at 3:00 PM
> Subject: Reminder: Linked Life Data telco on Emerging Practices Note
> 11AM ET / 5PM CET today
> To: HCLS <public-semweb-lifesci@w3.org>,
> linkedlifedatapracticesnote@googlegroups.com,
> expressionrdf@googlegroups.com, Richard Boyce
> <boycer@u.washington.edu>
>
>
> Dear Linked Lifers,
>
> We will be discussing the Emerging Practices note at 11AM ET / 5PM CET
> today. Dial in info below. I am attaching the current version with
> edits from Richard and myself. I will send a new version closer to the
> call.
>
> I have started to incorporate ideas from
> http://www.ncbi.nlm.nih.gov/pubmed/22449719 , and will also add a
> reference to the recently W3C Recommended
> http://www.w3.org/TR/2012/REC-r2rml-20120927/ , see also
> https://plus.google.com/u/0/114642613065018821852/posts/WND6CU8Bi1g .
>
> We will see if we have time to discuss the Expression Note as well.
>
> Cheers,
> Scott
>
> Dial in info:
> Dial-In #: +1.617.761.6200 (Cambridge, MA)
>
> Participant Access Code: 4257 ("HCLS")
> IRC Channel: irc.w3.org port 6665 channel #HCLS
> Note: Please use above for IRC. Warning: Mibbit stopped working for us
> a few weeks ago.
>
> --
> M. Scott Marshall, PhD
> MAASTRO clinic, http://www.maastro.nl/en/1/
> http://eurecaproject.eu/
> https://plus.google.com/u/0/114642613065018821852/posts
> http://www.linkedin.com/pub/m-scott-marshall/5/464/a22
Received on Monday, 29 October 2012 14:43:39 UTC

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