- From: Jun Zhao <jun.zhao@zoo.ox.ac.uk>
- Date: Wed, 23 May 2012 13:37:57 +0100
- To: public-semweb-lifesci@w3.org
Hi Katy,
Thanks for letting me know and all the useful pointers!
This is an exploratory call. If you spotted anything that we could tie
up together with SysMo project please give me a shout. Will be really
nice to link up things together!
Cheers,
Jun
On 23/05/2012 11:39, Katy Wolstencroft wrote:
> Hi Jun and all,
>
> Apologies, I can't join you today, but it is an interesting topic.
> On the subject of aligning related models, there is some nice work from
> Edda Klipp's group that you might want to look at (the makers of
> Semantic SBML)
>
> BMC Bioinformatics. <http://www.ncbi.nlm.nih.gov/pubmed/22289386#> 2012
> Jan 30;13:18.
> Propagating semantic information in biochemical network models.
> Schulz M
> <http://www.ncbi.nlm.nih.gov/pubmed?term=Schulz%20M%5BAuthor%5D&cauthor=true&cauthor_uid=22289386>,
> Klipp E
> <http://www.ncbi.nlm.nih.gov/pubmed?term=Klipp%20E%5BAuthor%5D&cauthor=true&cauthor_uid=22289386>,
> Liebermeister W
> <http://www.ncbi.nlm.nih.gov/pubmed?term=Liebermeister%20W%5BAuthor%5D&cauthor=true&cauthor_uid=22289386>.
>
>
> Genome Inform. <http://www.ncbi.nlm.nih.gov/pubmed/17503356#>
> 2006;17(1):62-71.
> SBMLmerge, a system for combining biochemical network models.
> Schulz M
> <http://www.ncbi.nlm.nih.gov/pubmed?term=Schulz%20M%5BAuthor%5D&cauthor=true&cauthor_uid=17503356>,
> Uhlendorf J
> <http://www.ncbi.nlm.nih.gov/pubmed?term=Uhlendorf%20J%5BAuthor%5D&cauthor=true&cauthor_uid=17503356>,
> Klipp E
> <http://www.ncbi.nlm.nih.gov/pubmed?term=Klipp%20E%5BAuthor%5D&cauthor=true&cauthor_uid=17503356>,
> Liebermeister W
> <http://www.ncbi.nlm.nih.gov/pubmed?term=Liebermeister%20W%5BAuthor%5D&cauthor=true&cauthor_uid=17503356>.
>
>
> Annotation and *merging* of *SBML* models with semanticSBML.
> <http://www.ncbi.nlm.nih.gov/pubmed/19933161>
> Krause F, Uhlendorf J, Lubitz T, Schulz M, Klipp E, Liebermeister W.
> Bioinformatics. 2010 Feb 1;26(3):421-2. Epub 2009 Nov 17.
>
> Best wishes,
>
> Katy
>
> On 22/05/2012 17:53, Mark wrote:
>> Excellent! Looking forward to it!
>>
>> M
>>
>>
>>
>> On Tue, 22 May 2012 15:27:12 +0200, Jun Zhao <jun.zhao@zoo.ox.ac.uk>
>> wrote:
>>
>>> Dear all,
>>>
>>> I am helping Lena to chair tomorrow's call because she is tied up
>>> with travel plans.
>>>
>>> Tomorrow we are planning to learn more about the MAPK pathway by
>>> looking into the BioModels database, and how to align related models
>>> using approaches like Semantic SBML or others.
>>>
>>> Agenda below:
>>>
>>> Meeting: HCLS System Biology
>>> Date: May 23, 2012
>>> Frequency: Every other Wednesday
>>> Convener: Jun Zhao
>>> Dial-In #: +1.617.761.6200 (Cambridge, MA)
>>> VoIP address: sip:zakim@voip.w3.org
>>> Participant Access Code: 4257 ("HCLS")
>>> IRC Channel: irc.w3.org port 6665 channel #HCLS
>>> IRC Web: http://goo.gl/A6WZn
>>>
>>> Agenda
>>>
>>> * (Semantic) alignment of SysBio Model related to MAPK pathways
>>> * See also:
>>> ** BioModels Database: http://www.ebi.ac.uk/biomodels-main/
>>> ** Semantic SBML: http://semanticsbml.org/semanticSBML/simple/index
>>> * AOB
>>>
>>> Hope to see as many of you as possible. Come to help!
>>>
>>> Cheers,
>>>
>>> Jun
>>
>
>
Received on Wednesday, 23 May 2012 12:38:23 UTC