- From: Helena Deus <helenadeus@gmail.com>
- Date: Wed, 13 Jun 2012 18:29:00 +0200
- To: bio2rdf <bio2rdf@googlegroups.com>, W3C HCLSIG hcls <public-semweb-lifesci@w3.org>
Received on Wednesday, 13 June 2012 16:29:56 UTC
Hi there, I am running the following query in BIND through federated query: select * where { SERVICE <http://bind.bio2rdf.org/sparql> { ?protein1 <http://bio2rdf.org/ns/bio2rdf#xGI> ?protein2 . ?protein1 a <http://bio2rdf.org/ns/bind:MolType-protein> . ?protein2 a <http://bio2rdf.org/ns/bind:MolType-protein> . filter ( ?protein1 != ?protein2 ) } } This strange list of "protein associations" does not seem to make sense; Some of these associations, e.g. <http://bio2rdf.org/gi:9606> <http://bio2rdf.org/gi:33589859> Appear to come from the BIND raw file "BDB_cid.txt <http://www.bindingdb.org/bind/BDB_cid.txt>( 5.72 MB ) Mapping between BindingDB monomerid and PubChem cid" Which would mean that gi:9609 is a monomer and gi:33589859 is a pubchem cid, which is a compound (in this case, it goes by the very long name of tetra-O-benzyl-d-mannitol deriv. 1jj, D-Mannitol, 1,6-bis-O-[(2-fluorophenyl)methyl]-2,5-bis-O-[(4-fluorophenyl)methyl]-) So, I think that a whole bunch of identifiers appear to be misclassified... Unless I am missing something... Any help with be greatly appreciated! Best, -- Helena F. Deus Post-Doctoral Researcher at DERI/NUIG http://lenadeus.info/
Received on Wednesday, 13 June 2012 16:29:56 UTC