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RE: ensembl SPARQL endpoint

From: Michael Miller <Michael.Miller@systemsbiology.org>
Date: Thu, 20 Oct 2011 08:20:35 -0700
Message-ID: <e0fff663d1e15e270bfd3e1cbce72ef9@mail.gmail.com>
To: Helena Deus <helenadeus@gmail.com>
Cc: W3C HCLSIG hcls <public-semweb-lifesci@w3.org>, philip.cotter@ucd.ie, Philippe <proccaserra@gmail.com>, Joachim Baran <Joachim.Baran@oicr.on.ca>
hi lena,

also, if you find a sparql end point for other sequence
databases/repositories often they will have a one-to-one reference into



Michael Miller

Software Engineer

Institute for Systems Biology

*From:* public-semweb-lifesci-request@w3.org [mailto:
public-semweb-lifesci-request@w3.org] *On Behalf Of *Joachim Baran
*Sent:* Wednesday, October 19, 2011 7:31 AM
*To:* Philippe; Helena Deus
*Cc:* W3C HCLSIG hcls; philip.cotter@ucd.ie
*Subject:* Re: ensembl SPARQL endpoint


On 19/10/2011 10:53, Helena Deus wrote:

I am working with agilent probe_ids and it seems only ensembl has the
correspondence to the correct gene. Does anyone know of any plans for
RDF-izing or adding a SPARQL endpoint to ensembl?

  A subset of SPARQL is supported in the release candidate 7 of BioMart

  Output is either provided in form of SPARQL-XML or RDF N3. The processors
for formatting are selected in the query URL, which are "SPARQLXML" and
"RDFN3" respectively. In the documentation, only "SPARQLXML" is given as an
example, but you can replace it with "RDFN3"*.


* in most cases

*Joachim Baran, PhD**
*Database Programmer/Technical Analyst, Informatics and Bio-computing

*Ontario Institute for Cancer Research*
MaRS Centre, South Tower

101 College Street, Suite 800

Toronto, Ontario, Canada M5G 0A3

Tel: 647-258-4319

Toll-free: 1-866-678-6427


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Received on Thursday, 20 October 2011 15:21:11 UTC

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