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Re: ensembl SPARQL endpoint

From: Joachim Baran <Joachim.Baran@oicr.on.ca>
Date: Wed, 19 Oct 2011 10:30:44 -0400
To: Philippe <proccaserra@gmail.com>, Helena Deus <helenadeus@gmail.com>
CC: W3C HCLSIG hcls <public-semweb-lifesci@w3.org>, "philip.cotter@ucd.ie" <philip.cotter@ucd.ie>
Message-ID: <CAC455F9.5C17%joachim.baran@oicr.on.ca>

On 19/10/2011 10:53, Helena Deus wrote:
I am working with agilent probe_ids and it seems only ensembl has the correspondence to the correct gene. Does anyone know of any plans for RDF-izing or adding a SPARQL endpoint to ensembl?
  A subset of SPARQL is supported in the release candidate 7 of BioMart 0.8: https://code.oicr.on.ca/svn/biomart/biomart-java/branches/release-0_8-candidate_7

  Output is either provided in form of SPARQL-XML or RDF N3. The processors for formatting are selected in the query URL, which are "SPARQLXML" and "RDFN3" respectively. In the documentation, only "SPARQLXML" is given as an example, but you can replace it with "RDFN3"*.


* in most cases

Joachim Baran, PhD
Database Programmer/Technical Analyst, Informatics and Bio-computing

Ontario Institute for Cancer Research
MaRS Centre, South Tower
101 College Street, Suite 800
Toronto, Ontario, Canada M5G 0A3

Tel: 647-258-4319
Toll-free: 1-866-678-6427

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Received on Thursday, 20 October 2011 09:04:51 UTC

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