- From: Egon Willighagen <egon.willighagen@gmail.com>
- Date: Tue, 9 Feb 2010 11:07:39 +0100
- To: public-semweb-lifesci <public-semweb-lifesci@w3.org>
Hi all, as indicated on the LODD call, I had some trouble getting the ChEMBL SPARQL end point somewhat faster. The end point has move to a new more powerful Virtuoso server, also with more sane server settings: http://chem-bla-ics.blogspot.com/2010/02/chembl-rdf-1sparql-end-point.html The RDF graph links out to Bio2RDF, and the obvious next step is link to in the LODD network... However, I do not really seem to find requirements... I assume the regular LD [0] rules apply? The ChEMBL data is only available as SPARQL right now, but it a start... (the rest is a bit of PHP wrapping. BTW, anyone aware of a simple PHP lib for that? It's not much code, but I rather reuse anyway.)... Second thing is how to provide links... the InChI is mentioned (mis-capatalized at [1], which makes me wonder who I should ask for permission to make (minor) changes to the wiki), but many DBs do not have URIs which include the InChI, making it rather difficult to link to that resource in a general, independent way... that is, there is no [2] matching http://www4.wiwiss.fu-berlin.de/drugbank/snorql/?describe=http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugs/DB00010. More general, is there a requirement and/or policy on how the resources should be linked up? Looking forward to hearing from you, Egon 0.http://www.w3.org/DesignIssues/LinkedData.html 1.http://esw.w3.org/topic/HCLSIG/LODD/Data/ 2.http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugs/InChI=1/C149H246N44O42S/c1-20-77(13)116(191-122(211)81(17)168-132(221)104(66-113(204)205)178-121(210)79(15)167-123(212)88(152)62-84-39-43-86(198)44-40-84)145(234)185-102(63-83-32-23-22-24-33-83)138(227)193-118(82(18)197)146(235)186-103(65-111(155)202)137(226)189-108(71-196)142(231)182-101(64-85-41-45-87(199)46-42-85)136(225)175-93(38-31-56-165-149(161)162)126(215)174-91(35-26-28-53-151)131(220)190-115(76(11)12)143(232)184-97(58-72(3)4)124(213)166-68-112(203)170-94(47-49-109(153)200)128(217)180-100(61-75(9)10)135(224)188-106(69-194)140(229)169-80(16)120(209)172-92(37-30-55-164-148(159)160)125(214)173-90(34-25-27-52-150)127(216)179-99(60-74(7)8)134(223)181-98(59-73(5)6)133(222)176-95(48-50-110(154)201)129(218)183-105(67-114(206)207)139(228)192-117(78(14)21-2)144(233)177-96(51-57-236-19)130(219)187-107(70-195)141(230)171-89(119(156)208)36-29-54-163-147(157)158/h22-24,32-33,39-46,72-82,88-108,115-118,194-199H,20-21,25-31,34-38,47-71,150-152H2,1-19H3,(H2,153,200)(H2,154,201)(H2,155,202)(H2,156,208)(H,166,213)(H,167,212)(H,168,221)(H,169,229)(H,170,203)(H,171,230)(H,172,209)(H,173,214)(H,174,215)(H,175,225)(H,176,222)(H,177,233)(H,178,210)(H,179,216)(H,180,217)(H,181,223)(H,182,231)(H,183,218)(H,184,232)(H,185,234)(H,186,235)(H,187,219)(H,188,224)(H,189,226)(H,190,220)(H,191,211)(H,192,228)(H,193,227)(H,204,205)(H,206,207)(H4,157,158,163)(H4,159,160,164)(H4,161,162,165)/f/h157,159,161,163-193,204,206H,153-156,158,160,162H2 -- Post-doc @ Uppsala University Proteochemometrics / Bioclipse Group of Prof. Jarl Wikberg Homepage: http://egonw.github.com/ Blog: http://chem-bla-ics.blogspot.com/ PubList: http://www.citeulike.org/user/egonw/tag/papers
Received on Tuesday, 9 February 2010 10:08:33 UTC