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Re: BioRDF Telcon

From: Kei Cheung <kei.cheung@yale.edu>
Date: Tue, 01 Sep 2009 15:04:55 -0400
To: Maryann Martone <maryann@ncmir.ucsd.edu>
Cc: Nigam Shah <nigam@stanford.edu>, Helen Parkinson <parkinson@ebi.ac.uk>, HCLS <public-semweb-lifesci@w3.org>, tomasz.adamusiak@gmail.com, Fahim Imam <smtifahim@gmail.com>
Message-id: <4A9D7057.1090707@yale.edu>
Thanks for letting us know, Maryann.

-Kei

Maryann Martone wrote:
> It is already.
>
> On Sep 1, 2009, at 11:58 AM, Kei Cheung wrote:
>
>> Nigam Shah wrote:
>>> On Tue, Sep 1, 2009 at 6:37 AM, Helen Parkinson <parkinson@ebi.ac.uk 
>>> <mailto:parkinson@ebi.ac.uk>> wrote:
>>>
>>>    The performance depends largely on how well the ontology is
>>>    aligned with the input data, for this reason we developed our own
>>>    ontology.
>>>
>>> This is very true. However, if there is already an existing ontology 
>>> that matches the input data well (e.g. the NCI Thesaurus in case of 
>>> Tissue Microarray Annotations in TMAD (http://tma.stanford.edu/) .. 
>>> then its possible to use the annotator tool at NCBO 
>>> (http://bioportal.bioontology.org/annotate).
>>>
>>> Regards,
>>> Nigam.
>> I notice that EFO is accessible through BioPortal. As the Neurolex 
>> group is in the process of updating NIFSTD, perhaps the new version 
>> of NIFSTD may also be made accessible through BioPortal when it's ready.
>>
>> Thanks,
>>
>> -Kei
>>
>
>
>
>
> Maryann Martone
> Professor-In-Residence
> Dept of Neurosciences
> University of California, San Diego
> San Diego, CA  92093-0446
> Tel:  858 822 0745
> Fax:  858 246 0644
>
>
>
>
>
Received on Tuesday, 1 September 2009 19:05:43 UTC

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