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Re: BioRDF Telcon

From: Maged N.K. Boulos <mnkboulos@gmail.com>
Date: Mon, 17 Nov 2008 23:39:37 +0000
Message-ID: <dad227630811171539p3755b885sb37dbff551159936@mail.gmail.com>
To: "Andrew Su" <asu@gnf.org>, HCLS <public-semweb-lifesci@w3.org>
It's OK. I very much enjoyed your presentation. Thanks for your
interest in our study. The PubMed link is to our recent AMIA Annual
Symposium 2008 paper (extended abstract)/poster (both attached in PDF
format in one compressed zip archive). The full paper (5000 words) is
yet to appear in the January 2009 (or possibly December 2008) issue of
The Annals of Pharmacotherapy and should very soon be posted online at
http://www.theannals.com/papbysection.dtl (Articles Ahead of Print).

You might have noted PubMed's attempt to link authors to their
articles. Not as (semantically) clever as some other tools/search
interfaces that mine the same or similar bibliographic
database(s)/corpus(corpora) like http://www.biomedexperts.com/. A
'challenge test' would be with names/surnames and initials like mine
(full is: Maged N. Kamel Boulos), which different journals present in
slightly different ways, yet NLM PubMed interface is not capable of
linking them all to the same person. An easy to solve Semantic
Web/"intelligent" mining issue :), but until PubMed can do it, I have
created this link: http://tinyurl.com/6rqll6 (please note that not all
of my publications are indexed in PubMed). You will find other "Web
2.0" papers of mine in the linked collection.

Kind regards,
--Maged

On Mon, Nov 17, 2008 at 10:05 PM, Andrew Su <asu@gnf.org> wrote:
> Maged,
>
> Interesting talk this morning.  (Sorry my presentation went over a
> bit...)  I saw in the minutes you linked to this paper
> (http://www.ncbi.nlm.nih.gov/pubmed/18998977).  Do you mind sending me a
> PDF copy?  Very interested to read about your analysis...
>
> Cheers,
> -andrew
>
>> -----Original Message-----
>> From: public-semweb-lifesci-request@w3.org [mailto:public-semweb-
>> lifesci-request@w3.org] On Behalf Of Maged N.K. Boulos
>> Sent: Monday, November 17, 2008 10:47 AM
>> To: Kei Cheung; HCLS
>> Subject: Re: BioRDF Telcon
>>
>>
>> I invite you all to explore the SciLands in Second Life:
>> http://www.scilands.org/ as a starting point, to experience first hand
>> what others have recently been doing, e.g., Genome Island, ToxTown (US
>> NIH NLM) and many others.
>>
>> Tox Town at Virtual NLM: Environmental health information from the
>> U.S. National Library of Medicine -
>> http://slurl.com/secondlife/Virtual%20NLM/134/152/25 (< immerse
>> yourself in a virtual town to explore our environment and the
>> chemicals in it - lots of current and planned (inter)activities)
>>
>> The Gene Pool - http://slurl.com/secondlife/Genome/127/129/49 (info:
>> http://department.txwes.edu/bio/mclark/SLPPT/Denver.ppt ) (< immerse
>> yourself inside a mega 3D cell and explore different organelles...
>> many more to do there, including visiting Mendel's church and re-doing
>> his old experiments...)
>>
>> American Chemical Society in Second Life -
>> http://slurl.com/secondlife/ACS/107/231/27 (<where you can get free 3D
>> drug, hormone and other chemical molecules - also available from
>> Second Nature (Nature Publishing Group) -
>> http://slurl.com/secondlife/Second%20Nature/150/96/23 )
>>
>> SciLands in Second Life: http://www.scilands.org/ - see also:
>> http://healthcybermap.org/sl.htm
>>
>> This I am sure will generate many nice ideas for our community...
>>
>> On Mon, Nov 17, 2008 at 6:27 PM, Kei Cheung <kei.cheung@yale.edu>
>> wrote:
>> > Hi Maged,
>> >
>> > Thanks for the presentation again. I think it's informative. One of
>> my
>> > thoughts is that what kind of 3D wiki visualization that we can
>> > do/demonstrate in the near future (e.g., neuroscience and drugs?)
>> >
>> > Best,
>> >
>> > -Kei
>> >
>> > Maged N.K. Boulos wrote:
>> >>
>> >> Thanks Kei. Please find below a link to download my slides for
>> today:
>> >> http://healthcybermap.org/MNKB--Why_visualize_RL_data_in_SL.zip
>> >>
>> >> All good wishes, --Maged
>> >>
>> >> On Fri, Nov 14, 2008 at 8:16 PM, Kei Cheung <kei.cheung@yale.edu>
>> wrote:
>> >>
>> >>>
>> >>> This is a reminder that the BioRDF call will be held at 11 am
> (EDT)
>> on
>> >>> Monday, November 17 (see details below).
>> >>> * Web visualization (Maged Kamel Boulos)
>> >>>
>> >>
>> >>
>> >
>> >
>> >
>
>

Received on Monday, 17 November 2008 23:40:14 UTC

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