- From: Peter Ansell <ansell.peter@gmail.com>
- Date: Mon, 14 Jul 2008 21:42:29 +1000
- To: "Matthias Samwald" <samwald@gmx.at>
- Cc: "w3c semweb hcls" <public-semweb-lifesci@w3.org>
The edit link for that template page is on the proteins page, you just have to know which one to click, above and right of the infobox. It isn't obvious though! Cheers, Peter 2008/7/14 Matthias Samwald <samwald@gmx.at>: > > Oh, I see. The link to this other page should be mentioned in the comments > of the original wiki page, since it is rather unlikely that a researcher > that wants to quickly update the protein box has the motivation to find out > how he can actually reach that other page. > > ~~ Matthias > >> >> The Protein Box Bot [1] inserts templates based on the geneid that is >> given to it, in particular for that page it inserts a template from >> another page [2]. Editing that page customises the output that is seen >> in the infobox on that page. It should be relatively simple to take >> the pages like [2] and retrieve semantic information from them. >> >> Cheers, >> >> Peter >> >> [1] http://en.wikipedia.org/w/index.php?title=Template:PBB&action=edit >> [2] >> http://en.wikipedia.org/w/index.php?title=Template:PBB/1605&action=edit >> >> 2008/7/14 Matthias Samwald <samwald@gmx.at>: >>> >>> It is not surprising that the protein/gene information is missing from >>> DBpedia. Looking at >>> http://en.wikipedia.org/w/index.php?title=Dystroglycan&action=edit >>> it seems like this information is not held in the source of the wiki >>> page. >>> Maybe someone with better knowledge about Mediawiki could explain how >>> this >>> works and how the information could be harvested by DBpedia? I am >>> planning >>> to write a documentation for the DBpedia developers that could help them >>> improve the representation of biomedical wiki entries in DBpedia (such as >>> creating direct links to the URIs of Uniprot-RDF). This could also be a >>> helpful addition. >>> >>> Cheers, >>> Matthias Samwald >>> DERI Galway, Ireland // Semantic Web Company, Austria >>> >>> >>> >>> >>> ----- Original Message ----- From: "Peter Ansell" >>> <ansell.peter@gmail.com> >>> To: "w3c semweb hcls" <public-semweb-lifesci@w3.org> >>> Sent: Monday, July 14, 2008 8:48 AM >>> Subject: Re: 'Gene WIki' announced >>> >>> >>>> >>>> When Francois Belleau was investigating integrating the infobox >>>> information into Bio2RDF he found that the infoboxes were missing in >>>> the dbpedia database. Not sure if that changed since he last checked. >>>> >>>> It would be very valuable to have the information from infoboxes and >>>> the gene-wiki templates in dbpedia. Might need to do a custom parser >>>> for the gene-wiki templates if they aren't similar to infoboxes. >>>> >>>> Cheers, >>>> >>>> Peter >>>> >>>> 2008/7/14 Kei Cheung <kei.cheung@yale.edu>: >>>>> >>>>> According to http://wiki.dbpedia.org/Datasets#h18-11, DBpedia contains >>>>> data >>>>> extracted from infoboxes (which should include gene/protein infoboxes). >>>>> >>>>> -Kei >>>>> >>>>> Matthias Samwald wrote: >>>>> >>>>>> >>>>>> It seems like the protein/gene infoboxes are not reflected in DBpedia, >>>>>> since the information is not held in conventional infoboxes (as far as >>>>>> I >>>>>> have understood). >>>>>> >>>>>> Compare >>>>>> >>>>>> http://dbpedia.org/page/Dystroglycan >>>>>> http://en.wikipedia.org/wiki/Dystroglycan >>>>>> >>>>>> ----- Original Message ----- From: "Kei Cheung" <kei.cheung@yale.edu> >>>>>> >>>>>> What about DBpedia (http://dbpedia.org)? >>>>>> >>>>>> -Kei >>>>>> >>>>>> >>>>> >>>>> >>>>> >>>> >>> >>> >>> >> > > >
Received on Monday, 14 July 2008 11:43:07 UTC