- From: Matthias Samwald <samwald@gmx.at>
- Date: Mon, 14 Jul 2008 12:01:10 +0200
- To: "Peter Ansell" <ansell.peter@gmail.com>
- Cc: "w3c semweb hcls" <public-semweb-lifesci@w3.org>
Oh, I see. The link to this other page should be mentioned in the comments of the original wiki page, since it is rather unlikely that a researcher that wants to quickly update the protein box has the motivation to find out how he can actually reach that other page. ~~ Matthias > > The Protein Box Bot [1] inserts templates based on the geneid that is > given to it, in particular for that page it inserts a template from > another page [2]. Editing that page customises the output that is seen > in the infobox on that page. It should be relatively simple to take > the pages like [2] and retrieve semantic information from them. > > Cheers, > > Peter > > [1] http://en.wikipedia.org/w/index.php?title=Template:PBB&action=edit > [2] > http://en.wikipedia.org/w/index.php?title=Template:PBB/1605&action=edit > > 2008/7/14 Matthias Samwald <samwald@gmx.at>: >> It is not surprising that the protein/gene information is missing from >> DBpedia. Looking at >> http://en.wikipedia.org/w/index.php?title=Dystroglycan&action=edit >> it seems like this information is not held in the source of the wiki >> page. >> Maybe someone with better knowledge about Mediawiki could explain how >> this >> works and how the information could be harvested by DBpedia? I am >> planning >> to write a documentation for the DBpedia developers that could help them >> improve the representation of biomedical wiki entries in DBpedia (such as >> creating direct links to the URIs of Uniprot-RDF). This could also be a >> helpful addition. >> >> Cheers, >> Matthias Samwald >> DERI Galway, Ireland // Semantic Web Company, Austria >> >> >> >> >> ----- Original Message ----- From: "Peter Ansell" >> <ansell.peter@gmail.com> >> To: "w3c semweb hcls" <public-semweb-lifesci@w3.org> >> Sent: Monday, July 14, 2008 8:48 AM >> Subject: Re: 'Gene WIki' announced >> >> >>> >>> When Francois Belleau was investigating integrating the infobox >>> information into Bio2RDF he found that the infoboxes were missing in >>> the dbpedia database. Not sure if that changed since he last checked. >>> >>> It would be very valuable to have the information from infoboxes and >>> the gene-wiki templates in dbpedia. Might need to do a custom parser >>> for the gene-wiki templates if they aren't similar to infoboxes. >>> >>> Cheers, >>> >>> Peter >>> >>> 2008/7/14 Kei Cheung <kei.cheung@yale.edu>: >>>> >>>> According to http://wiki.dbpedia.org/Datasets#h18-11, DBpedia contains >>>> data >>>> extracted from infoboxes (which should include gene/protein infoboxes). >>>> >>>> -Kei >>>> >>>> Matthias Samwald wrote: >>>> >>>>> >>>>> It seems like the protein/gene infoboxes are not reflected in DBpedia, >>>>> since the information is not held in conventional infoboxes (as far as >>>>> I >>>>> have understood). >>>>> >>>>> Compare >>>>> >>>>> http://dbpedia.org/page/Dystroglycan >>>>> http://en.wikipedia.org/wiki/Dystroglycan >>>>> >>>>> ----- Original Message ----- From: "Kei Cheung" <kei.cheung@yale.edu> >>>>> >>>>> What about DBpedia (http://dbpedia.org)? >>>>> >>>>> -Kei >>>>> >>>>> >>>> >>>> >>>> >>> >> >> >> >
Received on Monday, 14 July 2008 10:01:55 UTC