- From: Eric Prud'hommeaux <eric@w3.org>
- Date: Mon, 29 Oct 2007 20:30:42 -0400
- To: public-semweb-lifesci@w3.org
- Message-ID: <20071030003042.GK18946@w3.org>
http://www.w3.org/2007/10/29-BioRDF-minutes
BioRDF
29 Oct 2007
See also: [2]IRC log
Attendees
Present
EricP, Kei, Matthias, Don, Alan, Jonathan
Regrets
Scott Marshall
Chair
Alan
Scribe
kei
Contents
* [3]Topics
1. [4]SfN Poster Update - Don
2. [5]URI Note Integration - Jonathan
3. [6]UPDATE on KB Extension - Alan
4. [7]ISWC BOF - ericP
* [8]Summary of Action Items
_________________________________________________________________
SfN Poster Update - Don
* [9]Current SfN Poster
Don:
I am leaving for the neuroscience meeting on Saturday.
Don: Hopefully, this will be the last update.
Matthias: screenshot can be made?
alanr: Can we add to credits: Tom Stambaugh, affiliation: Zeetix LLC
Don: A query against 12 datasets. It seems to be a good number of
datasets. Neuroscientists are interested in finding genes involved in
signal transduction in pyramidal neuron. Go into pubmed articles.
Triples in KB. Pattern matching shown in the Triple graph. Data flow
diagram. Blue boxes are static db's, green circles are process (not a
UML model). Properties (instead of predicates) are used for
consistency sake. Use aliases for URI's.
Alan: it would be helpful if a link to down the pdf version poster can
be made available to people.
Kei: The poster looks good. It shows how different modules are
connected and integrated each other.
Alan: The higher resolution, the better. Tom Stambaugh who gave a
pointer to google map demo, we might want to give him credit.
Don: will leave for the neuroscience meeting on Saturday.
URI Note Integration - Jonathan
Jonathan: It's almost ready. Thurs or HCLS conference (or shortly
after), he will send out the email as a homework for the f2f meeting.
At f2f meeting, people will discuss more. After the meeting, the notes
will be put up on the w3c site for formal distribution.
<ericP> Don, we may need to put this picture on the web and send a
pointer to public-semweb-lifesci (maximum attachment size). Give me a
call (+1.617.599.3509) if there are problems.
Jonathan: HTTP vs LSID comparison was made. stays neutral in the HTTP
vs. LSID debate.
alan: we try not to use an extra piece of software to dereference the
object. People should give resolver's space. Other people are welcome
to give their suggestions/opinions.
EricP: Is it a recommendation?
Jonathan: not a protocol nor a recommendation.
Alan: interaction is important.
Jonathan: I asked Matthias for a review earlier.
Matthias: not much progress has been made.
Alan: suggest that Matthias give some feedback by Thursday.
... Is EricP on the review team?
Jonathan: people should look at the figure.
UPDATE on KB Extension - Alan
* [10]latest draft
* [11]OWLIM
* [12]BigOWLIM
Alan: I sent a note to OWLIM. to follow up with them in terms of
large-scale reasoning. See if they can try the HCLS KB.
... Attended a bio-workshop. Potential there.
... Attended a NIF meeting on Oct 19. DB mediation system was
demonstrated, mapping to Relational DB's. Map fields/values to the
system. The mapping specification file may be turned into D2RQ
(federated databases). SenseLab conversion was followed up Kei
introduced Alan to Luis Marenco (database architect of SenseLab).
... anybody looking at clinical data?
... meeting update?
Matthias: PDSP KI database was converted into OWL.
Alan: Regarding meeting update, two 15 minutes demos/presentations
from the share project.
EricP: Saturday meeting? update of the registration. getting
room/meals.
Jonathan: w3c budget? 10-12 people max. on Saturday. It'd be better to
leave informal. If there is a need to meet, people can meet at some
restaurant.
ISWC BOF - ericP
Eric: Tried to reach out to Japanese groups, but they wanted to meet
closer to home. Carole Goble may join.
Alan: we should look out for triplestore technologies to see if they
want to load up the HCLS datasets.
Regarding WWW2008, a proposal for a workshop was submitted.
Also, a proposal for tutorial is being prepared, which is designed to
teach contents and technologies.
Susie, Alan, EricP, and others are included in the tutorial proposal.
The proposal is due Nov. 1.
Finally, for BioIT World, a workshop is being organized there.
Summary of Action Items
[CONTINUTED] ACTION: AlanR to look at F2F schedule and propose
schedule change [recorded in
[13]http://www.w3.org/2007/10/22-BioRDF-minutes.html#action01]
[CONTINUTED] ACTION: EricP (with Jonathan) to schedule mtg with TAG
[recorded in
[14]http://www.w3.org/2007/10/22-BioRDF-minutes.html#action03]
[CONTINUTED] ACTION: EricP to check with admin to see if it is
possible for Ronan Fox DERI rep to attend both days and Bron Kisler
for Friday [recorded in
[15]http://www.w3.org/2007/10/22-BioRDF-minutes.html#action02]
[End of minutes]
_________________________________________________________________
Minutes formatted by David Booth's [16]scribe.perl version 1.128
([17]CVS log)
$Date: 2007/10/30 00:28:22 $
References
1. http://www.w3.org/
2. http://www.w3.org/2007/10/29-BioRDF-irc
3. http://www.w3.org/2007/10/29-BioRDF-minutes#agenda
4. http://www.w3.org/2007/10/29-BioRDF-minutes#update
5. http://www.w3.org/2007/10/29-BioRDF-minutes#URInote
6. http://www.w3.org/2007/10/29-BioRDF-minutes#kb
7. http://www.w3.org/2007/10/29-BioRDF-minutes#kb
8. http://www.w3.org/2007/10/29-BioRDF-minutes#ActionSummary
9. http://www.brainstage.com/poster_draft.png
10. http://sw.neurocommons.org/2007/uri-note/
11. http://www.ontotext.com/owlim/
12. http://www.ontotext.com/owlim/big/index.html
13. http://www.w3.org/2007/10/22-BioRDF-minutes.html#action01
14. http://www.w3.org/2007/10/22-BioRDF-minutes.html#action03
15. http://www.w3.org/2007/10/22-BioRDF-minutes.html#action02
16. http://dev.w3.org/cvsweb/~checkout~/2002/scribe/scribedoc.htm
17. http://dev.w3.org/cvsweb/2002/scribe/
--
-eric
home-office: +1.617.395.1213 (usually 900-2300 CET)
cell: +81.90.6533.3882
(eric@w3.org)
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Received on Tuesday, 30 October 2007 00:30:55 UTC