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RE: Adding addition resources to the accruing in the NeuroCommons

From: Eric Neumann <eneumann@teranode.com>
Date: Wed, 30 May 2007 14:20:31 -0400
Message-ID: <4EDA07B54F9F8F438E274DD6726FA6FC1447C7@MI8NYCMAIL09.Mi8.com>
To: wilbanks@creativecommons.org, "Jonathan Rees" <jar@mumble.net>
cc: "William Bug" <William.Bug@drexelmed.edu>, "public-semweb-lifesci hcls" <public-semweb-lifesci@w3.org>, "Alan Ruttenberg" <alanruttenberg@gmail.com>, "Rob Williams" <s2g2@mycingular.blackberry.net>, "MaryAnn Martone" <maryann@ncmir.ucsd.edu>, "Gully Burns" <gully@usc.edu>, "Karen Skinner" <ks79x@nih.gov>


I do recall doing this with Eric P's help while developing some of the sparql queries for the Banff demo. I agree, this is one way to 'wrap' some basic queries and allow users to select for GO, MESH, and anatomical terms to get useful results back in (not to mention that the results could have specific views made for the query templates ala Exhibit).

I am hoping we'll have a simple way to select for classes of gene's using a GO-term (localization and bio process) select-GUI...


-----Original Message-----
From: public-semweb-lifesci-request@w3.org on behalf of John Wilbanks
Sent: Wed 5/30/2007 10:32 AM
To: Jonathan Rees
Cc: William Bug; public-semweb-lifesci hcls; Alan Ruttenberg; Rob Williams; MaryAnn Martone; Gully Burns; Karen Skinner
Subject: Re: Adding addition resources to the accruing in the NeuroCommons

Is there an easy way to get the http GET string for these queries?  I'd 
love to start a page where non-semweb people can click and get answers 
to them...


Jonathan Rees wrote:
> Thanks for the suggestions. We'll be looking at these once we dig out
> from under all the things that we had put off until after Banff. Of
> course, if someone else would like to tackle them first, that would be
> great.
> It would be especially interesting to have good examples of queries
> that one would make that cross some of these sources with the ones we
> already have.
> Jonathan
> On 5/24/07, William Bug <William.Bug@drexelmed.edu> wrote:
>> Hi Jonathan,
>> Alan had mentioned at today's W3C HCLS IG call that you are looking to
>> expand the resources you track in the NeuroCommons RDF repository.  He
>> mentioned work to add resources such as the ATCC.
>> I mentioned there were a collection of resources being funded by the NIH
>> Blueprint funding initiative that I would also suggest should be on 
>> the list
>> for inclusion.  Alan suggested I pass these on to you.
>> You can find these described at:
>>  http://neuroscienceblueprint.nih.gov/
>> There are a few that Alan has already begun to work on (or examine for
>> inclusion) - e.g., CCDB, GENSAT, etc..  This page lists several more such
>> resources that provide broad-scoped value in the realm of 
>> neuroinformatics.
>> I'd particularly point to those resources listed under:
>>  Proteins & Genes (includes the burgeoning NIH Neuroscience Microarray
>> Consortium that Kei is a part of):
>> http://neuroscienceblueprint.nih.gov/neuroscience_resources/gene_protein.htm 
>>  Cells, Tissues, and DNA
>> http://neuroscienceblueprint.nih.gov/neuroscience_resources/cell_tissue.htm 
>>  Imaging Tools:
>> http://neuroscienceblueprint.nih.gov/neuroscience_resources/imaging_tools.htm 
>>  Neuroinformatics:
>> http://neuroscienceblueprint.nih.gov/neuroscience_resources/neuroinformatics.htm 
>> If you need any assistance in sorting through these resources, don't
>> hesitate to ask.  It might also be worthwhile having a brief NeuroCommons
>> Working Group Teleconference with folks such as Rob WIlliams, Maryann
>> Martone, Gully Burns, etc. to review these resources and help you put 
>> a list
>> of priorities in place.
>> Cheers,
>> Bill
>> Bill Bug
>> Senior Research Analyst/Ontological Engineer
>> Laboratory for Bioimaging  & Anatomical Informatics
>> www.neuroterrain.org
>> Department of Neurobiology & Anatomy
>> Drexel University College of Medicine
>> 2900 Queen Lane
>> Philadelphia, PA    19129
>> 215 991 8430 (ph)
>> 610 457 0443 (mobile)
>> 215 843 9367 (fax)
>> Please Note: I now have a new email - William.Bug@DrexelMed.edu

John Wilbanks
Executive Director, Science Commons
Received on Wednesday, 30 May 2007 18:31:36 UTC

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