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RE: [Obo-relations] FuGE, Ontologies, NINDS Microarray, GENSAT, ABA, and AD

From: Trish Whetzel <whetzel@pcbi.upenn.edu>
Date: Wed, 6 Jun 2007 12:25:57 -0400 (EDT)
To: "Miller, Michael D (Rosetta)" <Michael_Miller@Rosettabio.com>
cc: Kei Cheung <kei.cheung@yale.edu>, William Bug <William.Bug@DrexelMed.edu>, "Smith, Barry" <phismith@buffalo.edu>, "Kashyap, Vipul" <VKASHYAP1@PARTNERS.ORG>, samwald@gmx.at, public-semweb-lifesci@w3.org, obo-relations@lists.sourceforge.net, Paul Spellman <spellman@bdgp.lbl.gov>, Shrikant Mane <shrikant.mane@yale.edu>
Message-ID: <Pine.LNX.4.61.0706061217460.31812@hera.pcbi.upenn.edu>

Hi Kei,

This is really exciting to see someone talking about this. I mentioned 
this idea last year to the hcls list and personally is a direction that I 
wish mged was heading in for data mining, etc.


>> Before going into further
>> detail about how to convert NINDS microarray data into OWL ...
> one item i was unclear on was what the scope of conversion of microarray
> data into OWL you have in mind.  my take on this, as i said previously,
> is that in MAGE and eventually in MAGEv2, the actual performance of the
> microarray experiment and the results are captured in the XML schema
> generated from the UML model.  there is also the ability to annotate,
> using the ontology package, all the objects in the XML document.  it's
> this annotation i believe can be easily translated into RDF or OWL,
> based on the early version of the OMG Ontology Metamodel.  the rest of
> the document is easily comparable with other documents at the XML or UML
> level.
Received on Wednesday, 6 June 2007 16:26:15 UTC

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