- From: AJ Chen <anjun.chen@sbcglobal.net>
- Date: Mon, 08 May 2006 18:07:30 -0700
- To: public-semweb-lifesci@w3.org
- Message-ID: <445FEB52.8090208@sbcglobal.net>
I'm very excited about the vision described in the Knowledge Cycle task
force. It's my believe that the semantic web technologies will
eventually empower individual researchers to share and exchange research
information in new way that was not possible before. I would like to
propose a specific task for the Knowledge Cycle task force that could be
implemented in a short period of time.
Propose task: Distributed self-publishing of experiments
Deliverables:
1. Ontology for publishing projects and experiments. There are some
domain-specific ontologies, such as microarray experiment
ontology, already existed today. This task is intended to develop
a general purpose ontology for describing projects and experiments
in such a way that search and comparison of components of
experiments is possible.
2. A test data set that built from publicly available experiment
information. Ideally, if we can get a dozen labs to participate
in, we can also include real time experiment information from
distributed sources.
3. A demo server for aggregating experiments from distributed sources
(i.e. research labs) that have their experiments published in RDF
format using the ontology developed by this task.
4. A semantic search engine for searching and comparing projects and
experiments.
Use cases:
1. Any individual researcher can publish his or her project and
experiment in RDF format. Because data in such format can be
searched by semantic web search engine, it offers a new channel
for data sharing that will accelerate scientific discovery as well
as increase researchers' visibility.
2. Anyone can search for projects and experiments at various property
levels. Compared to traditional literature search, this semantic
search engine will provide much more relevant information.
Requirements: The task requires at least one person experienced in
designing/developing ontology and one person to implement the RDF data
store and search engine. I would be interested in doing implementation.
Welcome any comments.
AJ Chen, PhD
Bioinformatics Software Developer
Received on Wednesday, 10 May 2006 18:27:51 UTC