- From: Eric Neumann <eneumann@teranode.com>
- Date: Sun, 12 Mar 2006 22:33:31 -0500 (EST)
- To: "Brian Osborne" <osborne1@optonline.net>
- Cc: "Eric Miller" <em@w3.org>
Brian, I think using the eutils query is a good first step for retrieving XML to be converted to RDF, so I applaud your offer, and look forwards to us using it. cheers, Eric --- Brian Osborne <osborne1@optonline.net> wrote: > > Eric M., > > I'm looking at the Piggy Bank scrapers at > http://potlach.org/2005/10/scrapers/, I think we > want to create an > additional one that uses the results of an NCBI > eutils query, the PubMed one > is not well suited for the "Gene Neural related gene > data" and "Protein > Neural related protein data" tasks. > > I can provide the field-to-field mapping, XML to > Uniprot RDF, and I believe > I know what the eutils query is. Shall we proceed > with this or did you have > something else in mind? > > Brian O. > > > > On 3/8/06 9:08 AM, "Eric Miller" <em@w3.org> wrote: > > > > > > > On Mar 6, 2006, at 2:36 PM, Eric Neumann wrote: > > > >> > >> I have added a Parkinson's Disease (PD) > information aggregation use- > >> case on the wiki site: > >> > >> http://esw.w3.org/topic/ParkinsonsDisease > >> > >> Currently it has disease related information on > implicated genes, > >> causes, treatments, inheritance, and pathways. It > eventually is to > >> serve as a resource for one possible scientific > scenario that > >> effectively utilizes RDF structured data (and > eventually > >> ontologies) in support of neuroscience research. > > > > Excellent example! Use cases like this are > extremely helpful in > > putting the various tasks in an important context. > In particular, > > I've related the Parkinsons use case to the > following Task... > > > > Create RDF to describe entries in NCBI database > > - > http://esw.w3.org/topic/HCLSIG_BioRDF_Subgroup/Tasks/ > > Gene_Neural_related_gene_data > > > > I'd appreciates thoughts on additional tasks that > would be useful in > > addressing this use case. > > > > Note: I recommend that tasks list people who are > interested in > > working on the particular problem. > > > >> Additional scientific scenarios are very much > welcomed! > > > > agreed! > > > > -- > > eric miller > http://www.w3.org/people/em/ > > semantic web activity lead > http://www.w3.org/2001/sw/ > > w3c world wide web consortium > http://www.w3.org/ > > > > > > > > > > Eric Neumann Senior Director Product Strategy Teranode Corporation 83 South King Street, Suite 800 Seattle, WA 98104 +1 (781)856-9132 www.teranode.com
Received on Monday, 13 March 2006 03:33:41 UTC