- From: Gary Bader <bader@cbio.mskcc.org>
- Date: Wed, 28 Jun 2006 16:50:41 -0400
- To: biopax-discuss@cbio.mskcc.org, public-semweb-lifesci@w3.org, bio_bulletin_board@bioinformatics.org
Greetings, [My apologies if you have received a duplicate of this email message...] The Cancer Cell Map is a selected set of human cancer focused pathways. http://cancer.cellmap.org * Biologists can browse and search the Cancer Cell Map pathways. View gene expression data on any pathway. * Computational biologists can download all pathways in BioPAX format for global analysis. * Software developers can build software on top of the Cancer Cell Map using the web service API. * Download and install the cPath pathway database software to create a local mirror of the Cancer Cell Map. * All data is freely available. Released by the Computational Biology Center at Memorial Sloan-Kettering Cancer Center, in collaboration with Gary Bader's lab at the University of Toronto (http://baderlab.org). Pathway collection by the PandeyLab at Johns Hopkins University (http://pandeylab.igm.jhmi.edu) and the Institute of Bioinformatics (http://www.ibioinformatics.org). Cancer Cell Map pathways are also available in the new NetPath database (http://www.netpath.org) created by the PandeyLab and the Institute of Bioinformatics. In addition to 10 cancer pathways, 10 immune signaling pathways are available, all of which are freely available in GenMAPP, PSI-MI and BioPAX formats at http://www.netpath.org. BioPAX is an emerging standard for pathway data exchange (http://www.biopax.org). These pathways are unpublished at this time; please cite these websites until the pathways are described in a publication.
Received on Wednesday, 28 June 2006 20:57:30 UTC