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Re: Life Sciences oriented Knowledge Graphs and associated SPARQL endpoints

From: Kingsley Idehen <kidehen@openlinksw.com>
Date: Mon, 23 Mar 2020 12:58:12 -0400
To: public-lod@w3.org
Message-ID: <6687b01e-7882-8726-216a-202dea305f80@openlinksw.com>
On 3/23/20 5:38 AM, Michel Dumontier wrote:
> Hi Kingsley,
>   The canonical endpoint is https://bio2rdf.org/sparql 
>   Other life science data providers include
> linkedlifedata: http://linkedlifedata.com/,
> dbcls https://sparql-support.dbcls.jp/ ,
> uniprot https://sparql.uniprot.org/
>   possibly others?
> m.


Hi Michel,

We've loaded Bio2RDF (the latest, as we understand it) to our LOD Cloud
Cache instance. It would be helpful if you could assess completeness etc..

We are also happy to load any other Life Sciences datasets to this
instance, once we have RDF-dump urls.

[1] http://lod.openlinksw.com


Kingsley

>
> On Fri, Mar 20, 2020 at 5:19 PM Kingsley Idehen
> <kidehen@openlinksw.com <mailto:kidehen@openlinksw.com>> wrote:
>
>     On 9/17/19 7:57 PM, Michel Dumontier wrote:
>>     Hi,
>>      So, Bio2RDF's datasets are now just served from one sparql
>>     endpoint, and are loaded into different (versioned) graphs. how
>>     do you want to deal with this?
>>     m.
>
>
>     Hi Michel,
>
>     What is the canonical SPARQL endpoint for bio2rdf?
>
>     Are there new Life Sciences oriented Knowledge Graphs out there
>     with SPARQL endpoints that combine data from a variety of data
>     sources in the manner exemplified by Bio2RDF?
>
>     Kingsley
>
>>
>>     On Tue, Sep 17, 2019 at 3:15 PM Kingsley Idehen
>>     <kidehen@openlinksw.com <mailto:kidehen@openlinksw.com>> wrote:
>>
>>         Hi Everyone,
>>
>>         As part of the LODCloud effort (starting in 2007), a number
>>         of SPARQL Endpoints emerged around the initial SPARQL
>>         endpoint provided by DBpedia. Today, that cloud has grown
>>         into the largest Knowledge Graph on earth (by far!) and
>>         continues to drive new frontiers related to Artificial
>>         Intelligence and Machine Learning.
>>
>>         Having established itself as the preeminent global Knowledge
>>         Graph on earth, it is extremely important that we maintain an
>>         active list of SPARQL endpoints using practices that scale.
>>         Thus, we are providing a shared Google Spreadsheet for
>>         crowd-sourcing the maintenance of SPARQL endpoints that make
>>         up this important Knowledge Graph.
>>
>>         Please contribute your SPARQL endpoint(s) to the spreadsheet.
>>
>>         *Links*
>>
>>           * SPARQL Endpoint Google Spreadsheet 1
>>             <https://community.openlinksw.com/t/open-invitation-for-contributions-to-an-up-to-date-list-of-query-service-endpoints-that-underlie-the-massive-lodcloud-knowledgegraph/1202>
>>           * What is the LODCloud, and why is it important?
>>             <https://medium.com/virtuoso-blog/what-is-the-linked-open-data-cloud-and-why-is-it-important-1901a7cb7b1f>
>>
>>         -- 
>>         Regards,
>>
>>         Kingsley Idehen	      
>>         Founder & CEO 
>>         OpenLink Software   
>>         Home Page: http://www.openlinksw.com
>>         Community Support: https://community.openlinksw.com
>>         Weblogs (Blogs):
>>         Company Blog: https://medium.com/openlink-software-blog
>>         Virtuoso Blog: https://medium.com/virtuoso-blog
>>         Data Access Drivers Blog: https://medium.com/openlink-odbc-jdbc-ado-net-data-access-drivers
>>
>>         Personal Weblogs (Blogs):
>>         Medium Blog: https://medium.com/@kidehen
>>         Legacy Blogs: http://www.openlinksw.com/blog/~kidehen/
>>                       http://kidehen.blogspot.com
>>
>>         Profile Pages:
>>         Pinterest: https://www.pinterest.com/kidehen/
>>         Quora: https://www.quora.com/profile/Kingsley-Uyi-Idehen
>>         Twitter: https://twitter.com/kidehen
>>         Google+: https://plus.google.com/+KingsleyIdehen/about
>>         LinkedIn: http://www.linkedin.com/in/kidehen
>>
>>         Web Identities (WebID):
>>         Personal: http://kingsley.idehen.net/public_home/kidehen/profile.ttl#i
>>                 : http://id.myopenlink.net/DAV/home/KingsleyUyiIdehen/Public/kingsley.ttl#this
>>
>>
>>
>>     -- 
>>     Michel Dumontier
>>     Distinguished Professor of Data Science
>>     Maastricht University
>>     http://dumontierlab.com
>
>
>     -- 
>     Regards,
>
>     Kingsley Idehen	      
>     Founder & CEO 
>     OpenLink Software   
>     Home Page: http://www.openlinksw.com
>     Community Support: https://community.openlinksw.com
>     Weblogs (Blogs):
>     Company Blog: https://medium.com/openlink-software-blog
>     Virtuoso Blog: https://medium.com/virtuoso-blog
>     Data Access Drivers Blog: https://medium.com/openlink-odbc-jdbc-ado-net-data-access-drivers
>
>     Personal Weblogs (Blogs):
>     Medium Blog: https://medium.com/@kidehen
>     Legacy Blogs: http://www.openlinksw.com/blog/~kidehen/
>                   http://kidehen.blogspot.com
>
>     Profile Pages:
>     Pinterest: https://www.pinterest.com/kidehen/
>     Quora: https://www.quora.com/profile/Kingsley-Uyi-Idehen
>     Twitter: https://twitter.com/kidehen
>     Google+: https://plus.google.com/+KingsleyIdehen/about
>     LinkedIn: http://www.linkedin.com/in/kidehen
>
>     Web Identities (WebID):
>     Personal: http://kingsley.idehen.net/public_home/kidehen/profile.ttl#i
>             : http://id.myopenlink.net/DAV/home/KingsleyUyiIdehen/Public/kingsley.ttl#this
>
>
>
> -- 
> Michel Dumontier
> Distinguished Professor of Data Science
> Maastricht University
> http://dumontierlab.com


-- 
Regards,

Kingsley Idehen	      
Founder & CEO 
OpenLink Software   
Home Page: http://www.openlinksw.com
Community Support: https://community.openlinksw.com
Weblogs (Blogs):
Company Blog: https://medium.com/openlink-software-blog
Virtuoso Blog: https://medium.com/virtuoso-blog
Data Access Drivers Blog: https://medium.com/openlink-odbc-jdbc-ado-net-data-access-drivers

Personal Weblogs (Blogs):
Medium Blog: https://medium.com/@kidehen
Legacy Blogs: http://www.openlinksw.com/blog/~kidehen/
              http://kidehen.blogspot.com

Profile Pages:
Pinterest: https://www.pinterest.com/kidehen/
Quora: https://www.quora.com/profile/Kingsley-Uyi-Idehen
Twitter: https://twitter.com/kidehen
Google+: https://plus.google.com/+KingsleyIdehen/about
LinkedIn: http://www.linkedin.com/in/kidehen

Web Identities (WebID):
Personal: http://kingsley.idehen.net/public_home/kidehen/profile.ttl#i
        : http://id.myopenlink.net/DAV/home/KingsleyUyiIdehen/Public/kingsley.ttl#this


Received on Monday, 23 March 2020 16:58:31 UTC

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