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Re: Life Sciences oriented Knowledge Graphs and associated SPARQL endpoints

From: Michel Dumontier <michel.dumontier@gmail.com>
Date: Mon, 23 Mar 2020 10:38:27 +0100
Message-ID: <CALcEXf5F_dyun29zAU6Di4VqdOqBuOzEWo7dubzEnc1NU9W6cg@mail.gmail.com>
To: Kingsley Idehen <kidehen@openlinksw.com>
Cc: public-lod <public-lod@w3.org>
Hi Kingsley,
  The canonical endpoint is https://bio2rdf.org/sparql
  Other life science data providers include linkedlifedata:
http://linkedlifedata.com/, dbcls https://sparql-support.dbcls.jp/ ,
uniprot https://sparql.uniprot.org/
  possibly others?
m.

On Fri, Mar 20, 2020 at 5:19 PM Kingsley Idehen <kidehen@openlinksw.com>
wrote:

> On 9/17/19 7:57 PM, Michel Dumontier wrote:
>
> Hi,
>  So, Bio2RDF's datasets are now just served from one sparql endpoint, and
> are loaded into different (versioned) graphs. how do you want to deal with
> this?
> m.
>
>
> Hi Michel,
>
> What is the canonical SPARQL endpoint for bio2rdf?
>
> Are there new Life Sciences oriented Knowledge Graphs out there with
> SPARQL endpoints that combine data from a variety of data sources in the
> manner exemplified by Bio2RDF?
>
> Kingsley
>
>
> On Tue, Sep 17, 2019 at 3:15 PM Kingsley Idehen <kidehen@openlinksw.com>
> wrote:
>
>> Hi Everyone,
>>
>> As part of the LODCloud effort (starting in 2007), a number of SPARQL
>> Endpoints emerged around the initial SPARQL endpoint provided by DBpedia.
>> Today, that cloud has grown into the largest Knowledge Graph on earth (by
>> far!) and continues to drive new frontiers related to Artificial
>> Intelligence and Machine Learning.
>>
>> Having established itself as the preeminent global Knowledge Graph on
>> earth, it is extremely important that we maintain an active list of SPARQL
>> endpoints using practices that scale. Thus, we are providing a shared
>> Google Spreadsheet for crowd-sourcing the maintenance of SPARQL endpoints
>> that make up this important Knowledge Graph.
>>
>> Please contribute your SPARQL endpoint(s) to the spreadsheet.
>>
>> *Links*
>>
>>    - SPARQL Endpoint Google Spreadsheet 1
>>    <https://community.openlinksw.com/t/open-invitation-for-contributions-to-an-up-to-date-list-of-query-service-endpoints-that-underlie-the-massive-lodcloud-knowledgegraph/1202>
>>    - What is the LODCloud, and why is it important?
>>    <https://medium.com/virtuoso-blog/what-is-the-linked-open-data-cloud-and-why-is-it-important-1901a7cb7b1f>
>>
>> --
>> Regards,
>>
>> Kingsley Idehen	
>> Founder & CEO
>> OpenLink Software
>> Home Page: http://www.openlinksw.com
>> Community Support: https://community.openlinksw.com
>> Weblogs (Blogs):
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>>
>> Personal Weblogs (Blogs):
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>>               http://kidehen.blogspot.com
>>
>> Profile Pages:
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>>
>> Web Identities (WebID):
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>>
>>
>
> --
> Michel Dumontier
> Distinguished Professor of Data Science
> Maastricht University
> http://dumontierlab.com
>
>
> --
> Regards,
>
> Kingsley Idehen	
> Founder & CEO
> OpenLink Software
> Home Page: http://www.openlinksw.com
> Community Support: https://community.openlinksw.com
> Weblogs (Blogs):
> Company Blog: https://medium.com/openlink-software-blog
> Virtuoso Blog: https://medium.com/virtuoso-blog
> Data Access Drivers Blog: https://medium.com/openlink-odbc-jdbc-ado-net-data-access-drivers
>
> Personal Weblogs (Blogs):
> Medium Blog: https://medium.com/@kidehen
> Legacy Blogs: http://www.openlinksw.com/blog/~kidehen/
>               http://kidehen.blogspot.com
>
> Profile Pages:
> Pinterest: https://www.pinterest.com/kidehen/
> Quora: https://www.quora.com/profile/Kingsley-Uyi-Idehen
> Twitter: https://twitter.com/kidehen
> Google+: https://plus.google.com/+KingsleyIdehen/about
> LinkedIn: http://www.linkedin.com/in/kidehen
>
> Web Identities (WebID):
> Personal: http://kingsley.idehen.net/public_home/kidehen/profile.ttl#i
>         : http://id.myopenlink.net/DAV/home/KingsleyUyiIdehen/Public/kingsley.ttl#this
>
>

-- 
Michel Dumontier
Distinguished Professor of Data Science
Maastricht University
http://dumontierlab.com
Received on Monday, 23 March 2020 09:38:52 UTC

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