Virtuoso LOD hosting instance update

All,

We've reloaded: NeuroCommons.

Added:

1. Freebase (this is the version used in the Billion Triples Challenge 
for now; Freebase folks plan to make an up to data RDF dump available soon)
2. DBtune (*Yves please give this a look over*)
3. GeoSpecies


Quick Tests for NeuroCommons:

SPARQL:

# Banff 2007 Demo Query 1: GO Process Terms with "dendrite" in their names

PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX go: <http://purl.org/obo/owl/GO#>
PREFIX obo: <http://www.geneontology.org/formats/oboInOwl#>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>

select  ?name  ?class ?definition
where
{   ?class rdfs:subClassOf go:GO_0008150.
    ?class rdfs:label ?name.
    ?class obo:hasDefinition ?def.
    ?def rdfs:label ?definition
    filter(regex(str(?name),"[Dd]endrite"))
}
 

# Banff 2007 Demo Query 2: CA1 Pyramidal Neuron related genes involved 
in signal transduction processes
prefix go: <http://purl.org/obo/owl/GO#>
prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#>
prefix owl: <http://www.w3.org/2002/07/owl#>
prefix mesh: <http://purl.org/commons/record/mesh/>
prefix sc: <http://purl.org/science/owl/sciencecommons/>
prefix ro: <http://www.obofoundry.org/ro/ro.owl#>

select distinct ?genename ?processname
where
{ 
   ?paper ?p mesh:D017966.
   ?article sc:identified_by_pmid ?paper.
   ?gene sc:describes_gene_or_gene_product_mentioned_by ?article.
   ?protein rdfs:subClassOf ?res.
   ?res owl:onProperty ro:has_function.
   ?res owl:someValuesFrom ?res2.
   ?res2 owl:onProperty ro:realized_as.
   ?res2 owl:someValuesFrom ?process.
   { ?process <http://purl.org/obo/owl/obo#part_of> go:GO_0007166 }
      union
   { ?process rdfs:subClassOf go:GO_0007166 }
   ?protein rdfs:subClassOf ?parent.
   ?parent owl:equivalentClass ?res3.
   ?res3 owl:hasValue ?gene.
   ?gene sc:ggp_has_primary_description ?genename.
   ?process rdfs:label ?processname
}


Full Text Patterns:

1. ionotropic glutamate receptor signaling pathway
2. negative regulation of dendrite morphogenesis

   

Links:

1. http://lod.openlinksw.com/sparql -- SPARQL Endpoint
2. http://lod.openlinksw.com/fct/facet.vsp -- Server Hosted Faceted 
Browser Interface delivering "Full Text Search" and/or "Property or Type 
driven Find").


The loading effort continues :-)

-- 


Regards,

Kingsley Idehen	      Weblog: http://www.openlinksw.com/blog/~kidehen
President & CEO 
OpenLink Software     Web: http://www.openlinksw.com

Received on Friday, 27 February 2009 17:22:23 UTC