- From: Kingsley Idehen <kidehen@openlinksw.com>
- Date: Fri, 27 Feb 2009 12:21:48 -0500
- CC: public-lod@w3.org, "dbpedia-discussion@lists.sourceforge.net" <dbpedia-discussion@lists.sourceforge.net>
All, We've reloaded: NeuroCommons. Added: 1. Freebase (this is the version used in the Billion Triples Challenge for now; Freebase folks plan to make an up to data RDF dump available soon) 2. DBtune (*Yves please give this a look over*) 3. GeoSpecies Quick Tests for NeuroCommons: SPARQL: # Banff 2007 Demo Query 1: GO Process Terms with "dendrite" in their names PREFIX owl: <http://www.w3.org/2002/07/owl#> PREFIX go: <http://purl.org/obo/owl/GO#> PREFIX obo: <http://www.geneontology.org/formats/oboInOwl#> PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> select ?name ?class ?definition where { ?class rdfs:subClassOf go:GO_0008150. ?class rdfs:label ?name. ?class obo:hasDefinition ?def. ?def rdfs:label ?definition filter(regex(str(?name),"[Dd]endrite")) } # Banff 2007 Demo Query 2: CA1 Pyramidal Neuron related genes involved in signal transduction processes prefix go: <http://purl.org/obo/owl/GO#> prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> prefix owl: <http://www.w3.org/2002/07/owl#> prefix mesh: <http://purl.org/commons/record/mesh/> prefix sc: <http://purl.org/science/owl/sciencecommons/> prefix ro: <http://www.obofoundry.org/ro/ro.owl#> select distinct ?genename ?processname where { ?paper ?p mesh:D017966. ?article sc:identified_by_pmid ?paper. ?gene sc:describes_gene_or_gene_product_mentioned_by ?article. ?protein rdfs:subClassOf ?res. ?res owl:onProperty ro:has_function. ?res owl:someValuesFrom ?res2. ?res2 owl:onProperty ro:realized_as. ?res2 owl:someValuesFrom ?process. { ?process <http://purl.org/obo/owl/obo#part_of> go:GO_0007166 } union { ?process rdfs:subClassOf go:GO_0007166 } ?protein rdfs:subClassOf ?parent. ?parent owl:equivalentClass ?res3. ?res3 owl:hasValue ?gene. ?gene sc:ggp_has_primary_description ?genename. ?process rdfs:label ?processname } Full Text Patterns: 1. ionotropic glutamate receptor signaling pathway 2. negative regulation of dendrite morphogenesis Links: 1. http://lod.openlinksw.com/sparql -- SPARQL Endpoint 2. http://lod.openlinksw.com/fct/facet.vsp -- Server Hosted Faceted Browser Interface delivering "Full Text Search" and/or "Property or Type driven Find"). The loading effort continues :-) -- Regards, Kingsley Idehen Weblog: http://www.openlinksw.com/blog/~kidehen President & CEO OpenLink Software Web: http://www.openlinksw.com
Received on Friday, 27 February 2009 17:22:23 UTC