Re: ELIXIR Biohackathon 2020

Hi

Definitely agree that we want to focus around the Strategic Implementation Study (SIS*).

Egon, I like the idea of using Bioschemas to feed into PubChem. Let’s see what that looks like as a hackathon project. Is it a single project or part of a larger set?

Alasdair

* For those not familiar with the SIS, we are working on scraping markup so that it can be used within suitable community archives to facilitate search (much in the way TeSS does for training courses and material). The focus use cases are rare disease, plants, intrinsically disordered proteins, and toxicology (this last one is still to be confirmed if the ELIXIR community group gets the go ahead).

--
Alasdair J G Gray
Associate Professor in Computer Science,
School of Mathematical and Computer Sciences
Heriot-Watt University, Edinburgh, UK.

Email: A.J.G.Gray@hw.ac.uk<mailto:A.J.G.Gray@hw.ac.uk>
Web: http://www.macs.hw.ac.uk/~ajg33

ORCID: http://orcid.org/0000-0002-5711-4872

Office: Earl Mountbatten Building 1.39
Twitter: @gray_alasdair

To arrange a meeting: http://doodle.com/ajggray




From: Egon Willighagen <egon.willighagen@gmail.com>
Date: Monday, 2 March 2020 at 11:11
To: Carole Goble <carole.goble@manchester.ac.uk>
Cc: Alasdair Gray <A.J.G.Gray@hw.ac.uk>, "public-bioschemas@w3.org" <public-bioschemas@w3.org>
Subject: Re: ELIXIR Biohackathon 2020


Carole, agreed. The scraping and using that. Emma, in the Tox task, suggested to invite Evan Bolton of PubChem this year. He's interested in pipeling the scraped MolecularEntity content into PubChem

Egon

On Mon, Mar 2, 2020 at 11:55 AM Carole Goble <carole.goble@manchester.ac.uk<mailto:carole.goble@manchester.ac.uk>> wrote:

things related to the SIS

carole

________________________________
From: Gray, Alasdair J G [A.J.G.Gray@hw.ac.uk<mailto:A.J.G.Gray@hw.ac.uk>]
Sent: 02 March 2020 10:30
To: public-bioschemas@w3.org<mailto:public-bioschemas@w3.org>
Subject: ELIXIR Biohackathon 2020
Hi All

ELIXIR will be holding another Biohackathon this year. There is a call out for hack topics. Bioschemas has always been well represented at these hackathons, it would be good to see that again.

Is there anything that we would like to focus on this year?

Alasdair

--
Alasdair J G Gray
Associate Professor in Computer Science,
School of Mathematical and Computer Sciences
Heriot-Watt University, Edinburgh, UK.

Email: A.J.G.Gray@hw.ac.uk<mailto:A.J.G.Gray@hw.ac.uk>
Web: http://www.macs.hw.ac.uk/~ajg33

ORCID: http://orcid.org/0000-0002-5711-4872

Office: Earl Mountbatten Building 1.39
Twitter: @gray_alasdair

To arrange a meeting: http://doodle.com/ajggray




From: "info@elixir-europe.org<mailto:info@elixir-europe.org>" <info@elixir-europe.org<mailto:info@elixir-europe.org>>
Reply to: "info@elixir-europe.org<mailto:info@elixir-europe.org>" <info@elixir-europe.org<mailto:info@elixir-europe.org>>
Date: Monday, 2 March 2020 at 10:00
To: Alasdair Gray <A.J.G.Gray@hw.ac.uk<mailto:A.J.G.Gray@hw.ac.uk>>
Subject: ELIXIR Weekly Brief, 2 March 2020

BioHackathon Europe 2020<https://elixir-europe.us4.list-manage.com/track/click?u=751beffce2e491f94d6f66918&id=009830a352&e=e32907caf3>
9 - 13 November | Barcelona, Spain

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Hi, do you like citation networks? Already 51% of all citations are available<https://i4oc.org/> available for innovative new uses<https://twitter.com/hashtag/acs2ioc>. Join me in asking the American Chemical Society to join the Initiative for Open Citations too<https://www.change.org/p/asking-the-american-chemical-society-to-join-the-initiative-for-open-citations>. SpringerNature, the RSC and many others already did<https://i4oc.org/#publishers>.

-----
E.L. Willighagen
Department of Bioinformatics - BiGCaT
Maastricht University (http://www.bigcat.unimaas.nl/)
Homepage: http://egonw.github.com/

Blog: http://chem-bla-ics.blogspot.com/
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ORCID: 0000-0001-7542-0286<http://orcid.org/0000-0001-7542-0286>
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