- From: ljgarcia <ljgarcia@ebi.ac.uk>
- Date: Thu, 28 Jun 2018 15:18:23 +0100
- To: "Gray, Alasdair J G" <A.J.G.Gray@hw.ac.uk>
- Cc: Justin Clark-Casey <justinccdev@gmail.com>, fmichel@i3s.unice.fr, public-bioschemas@w3.org
Hi, I understood Franck's question in a different way. Alasdair says > I also agree that a context file should be provided which has the > chosen types and terms in it, i.e. the context file would define > Protein to be the URI http://purl.obolibrary.org/obo/PR_000000001. I think what Franck is asking is how to choose http://purl.obolibrary.org/obo/PR_000000001 over other possible terms to define a Protein. For the taxon case, same as it happens with proteins, there are multiple possibilities. Franck, is this your question? If it is, I do not think there is any agreement on how to choose, other than going for well-known ontologies broadly accepted by the community of interest, even better if the term is mapped to other possible ones. Regards, On 2018-06-28 11:50, Gray, Alasdair J G wrote: >> On 27 Jun 2018, at 19:19, Justin Clark-Casey <justinccdev@gmail.com> >> wrote: >> >> I think we should have mandatory known @types and properties. In >> my view, Bioschemas should be as easy as possible to write and >> consume. Multiple options will increase cognitive load on writers >> (which one do I choose? Why are these 2 examples using these >> different terms?) and open the door to greater inconsistency. >> Non-mandatory types will also raise the barriers for writing >> Bioschemas software that will have to be aware of equivalent >> mappings. > > I completely agree that we should have a single approved type for > each profile, and likewise for each property a single chosen term. > This is the whole point of having the profiles. > >> I would go one step further and say that Bioschemas should provide >> an http://bioschemas.org [1]context that will define types such as >> Taxon, rather than blessing particular ontology terms. > > I also agree that a context file should be provided which has the > chosen types and terms in it, i.e. the context file would define > Protein to be the URI http://purl.obolibrary.org/obo/PR_000000001. To > be completely explicit, we would not be defining a type in the > bioschemas namespace, e.g. http://bioschemas.org/Protein. > >> This context can also document equivalent terms in different >> ontologies. > > I like the idea that this also contains mappings to the equivalent > terms in other ontologies. > > Alasdair > > Alasdair J G Gray > Fellow of the Higher Education Academy > Assistant Professor in Computer Science, > School of Mathematical and Computer Sciences > (Athena SWAN Bronze Award) > Heriot-Watt University, Edinburgh UK. > > Email: A.J.G.Gray@hw.ac.uk > Web: http://www.macs.hw.ac.uk/~ajg33 > ORCID: http://orcid.org/0000-0002-5711-4872 > Office: Earl Mountbatten Building 1.39 > Twitter: @gray_alasdair > > Untitled Document > > ------------------------- > > _HERIOT-WATT UNIVERSITY IS THE TIMES & THE SUNDAY TIMES INTERNATIONAL > UNIVERSITY OF THE YEAR 2018_ > > Founded in 1821, Heriot-Watt is a leader in ideas and solutions. With > campuses and students across the entire globe we span the world, > delivering innovation and educational excellence in business, > engineering, design and the physical, social and life sciences. > > This email is generated from the Heriot-Watt University Group, which > includes: > > * Heriot-Watt University, a Scottish charity registered under number > SC000278 > * Edinburgh Business School a Charity Registered in Scotland, > SC026900. Edinburgh Business School is a company limited by guarantee, > registered in Scotland with registered number SC173556 and registered > office at Heriot-Watt University Finance Office, Riccarton, Currie, > Midlothian, EH14 4AS > * Heriot- Watt Services Limited (Oriam), Scotland's national > performance centre for sport. Heriot-Watt Services Limited is a > private limited company registered is Scotland with registered number > SC271030 and registered office at Research & Enterprise Services > Heriot-Watt University, Riccarton, Edinburgh, EH14 4AS. > > The contents (including any attachments) are confidential. If you are > not the intended recipient of this e-mail, any disclosure, copying, > distribution or use of its contents is strictly prohibited, and you > should please notify the sender immediately and then delete it > (including any attachments) from your system. > > Links: > ------ > [1] http://bioschemas.org/
Received on Thursday, 28 June 2018 14:18:53 UTC