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Re: Google Summer of Code

From: Rafael C. Jimenez <rafael.jimenez@elixir-europe.org>
Date: Fri, 19 Jan 2018 09:34:48 +0000
Message-ID: <CABH4q19p4gcyh3P9hK5BNd5g6CjOrrkFskD_iNWiTjy6=-_T6g@mail.gmail.com>
To: Leyla Garcia <ljgarcia@ebi.ac.uk>
Cc: "Gray, Alasdair J G" <A.J.G.Gray@hw.ac.uk>, public-bioschemas@w3.org, squizzat@ebi.ac.uk, Nicola Buso <nbuso@ebi.ac.uk>, Rodrigo Lopez <rls@ebi.ac.uk>
Hi Leyla,

Sorry for the late reply.

Related to the EBI search. I imagine you mean the EBI search summary pages?
Something like this would require the involvement of Rodrigo's team at the
EBI (CCed). I remember in one of Bioschemas workshops we briefly discussed
this as an application. I don't remember who, but I think Rodrigo, Silvano
or Nicola suggested the EBI search summary pages could use Bioschemas as
input. Below 3 ideas I thought could be interesting to be explored by a
student related to this topic. It would be great to count on Rodrigo,
Nicola and Silvano if they are interested.

   1. Demonstrate how the EBI summary results
   (gene, expression, protein, protein structure and literature) could be
   built consuming Bioschemas from the original data sources. In my opinion
   this would require A.- demonstrating how the contributing EBI resources
   (Ensembl, Expression atlas, Uniprot, ...) can expose the necessary
   information with Bioschemas and B.- demonstrate how to render the summary
   results as they are presented by the EBI search consuming Bioschemas.
   2. Demonstrate how the EBI search result pages could be marked up with
   3. Explore and propose a strategy to integrate 3rd party summary data
   via Bioschemas (similar to the idea of Track Hubs and DAS but with


On 15 Jan 2018 10:51, "Leyla Garcia" <ljgarcia@ebi.ac.uk> wrote:

Hi Alasdair,

I like the Validata project, let me know if I can collaborate somehow with
The EBI search could be done as well using Bioschemas markup so that would
be a possibility as well. I could help redacting the idea behind but I am
afraid not this week. @Rafael, what do you think of this idea? This is
something you have mentioned in the past.


On 11/01/2018 15:54, Gray, Alasdair J G wrote:

Hi All,

We would like to propose Bioschemas as a Google Summer of Code organisation
(deadline 23 January 2018).

I have started drafting ideas for projects in a google document, please
feel free to add more project ideas or details to my initial brain dump.

Best regards

Alasdair, Carole, and Rafa

Alasdair J G Gray

Fellow of the Higher Education Academy
Assistant Professor in Computer Science,
School of Mathematical and Computer Sciences
(Athena SWAN Bronze Award)
Heriot-Watt University, Edinburgh UK.

Email: A.J.G.Gray@hw.ac.uk
Web: http://www.macs.hw.ac.uk/~ajg33
ORCID: http://orcid.org/0000-0002-5711-4872
Office: Earl Mountbatten Building 1.39
Twitter: @gray_alasdair


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Received on Friday, 19 January 2018 09:35:58 UTC

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