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RE: How to access RDF for NeuroFibrillaryTangle (NFT) microarray study?

From: Michael Miller <mmiller@systemsbiology.org>
Date: Wed, 11 May 2011 09:30:42 -0700
Message-ID: <51c299d404991b2913a17c6effd241bc@mail.gmail.com>
To: Maryann Martone <maryann@ncmir.ucsd.edu>, "M. Scott Marshall" <mscottmarshall@gmail.com>
Cc: Anita Bandrowski <bandrow@gmail.com>, HCLS <public-semweb-lifesci@w3.org>, jgrethe@ucsd.edu, Amarnath Gupta <gupta@sdsc.edu>
hi all,

thanks for taking a look at this.

to clarify what i saw in NIF was the two studies we are interested in but
only with rudimentary meta data.  it wasn't clear how to query the rest of
NIF for more information, data, protocols used, etc. about those
experiments.

cheers,
michael

> -----Original Message-----
> From: Maryann Martone [mailto:maryann@ncmir.ucsd.edu]
> Sent: Tuesday, May 10, 2011 7:25 PM
> To: M. Scott Marshall
> Cc: Anita Bandrowski; Michael Miller; HCLS; jgrethe@ucsd.edu Jeffrey;
> Amarnath Gupta
> Subject: Re: How to access RDF for NeuroFibrillaryTangle (NFT)
> microarray study?
>
> Hi Scott:
>
> Not sure whether we've exported these in RDF yet, but added Jeff and
> Amarnath to this thread.
>
> Maryann
>
> On May 10, 2011, at 2:36 PM, M. Scott Marshall wrote:
>
> > Hi Anita,
> >
> > Following up on our previous conversation, Michael Miller (CC'd)
> > looked into getting a NIF version of RDF for one of the NFT
> microarray
> > data sets that we've represented in RDF so that we could compare but
> > wasn't sure how to proceed. Could you help us?
> >
> > We are looking into harmonizing representations and documenting what
> > we find as a relatively stable target for RDF representations in a
> W3C
> > note.
> >
> > <QUOTE>
> > http://neuinfo.org/nif/nifgwt.html?query="nifall"&category=Nervous
> > System Level:Microarray then add GSE4757 to search
> > <mscottm> Michael: I will look into the NIF version of our datasets.
> > <Zakim> +SatyaSahoo
> > <michael> and GSE5281 also returns a hit
> > <michael> but it isn't clear to me how to use this info within NIF
> > </QUOTE>
> >
> > Something completely different: Have you heard of the Enigma Project?
> > I thought that it was housed at UCSD but couldn't google it. It
> > involves radiomics (mapping omics to brain image data). I heard about
> > it at a BBMRI (biobanking) conference last year.
> >
> > Cheers,
> > Scott
> >
> > --
> > M. Scott Marshall, W3C HCLS IG co-chair, http://www.w3.org/blog/hcls
> > http://staff.science.uva.nl/~marshall
> >
>
> Maryann Martone, Ph. D.
> Professor-in-Residence
> Department of Neuroscience
> University of California, San Diego
> San Diego, CA 92093-0446
>
> 858-822-0745
Received on Wednesday, 11 May 2011 16:31:12 GMT

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